Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC40Q4G0X9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC40Q4G0X9 U85056.1-201ENST00000616429 682 ntBASIC25.71■■□□□ 1.71
CCDC40Q4G0X9 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC40Q4G0X9 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
CCDC40Q4G0X9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC40Q4G0X9 RPS2P7-201ENST00000447334 885 ntBASIC25.7■■□□□ 1.7
CCDC40Q4G0X9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC40Q4G0X9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC40Q4G0X9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC40Q4G0X9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC40Q4G0X9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC40Q4G0X9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC40Q4G0X9 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC40Q4G0X9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC40Q4G0X9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 DUX4L9-201ENST00000449051 1259 ntBASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CCDC40Q4G0X9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC40Q4G0X9 MIR6765-201ENST00000614092 87 ntBASIC25.67■■□□□ 1.7
CCDC40Q4G0X9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC40Q4G0X9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC25.65■■□□□ 1.7
CCDC40Q4G0X9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
CCDC40Q4G0X9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC40Q4G0X9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.64■■□□□ 1.7
CCDC40Q4G0X9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC40Q4G0X9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC40Q4G0X9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 LINC00543-201ENST00000567234 1845 ntBASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC40Q4G0X9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CCDC40Q4G0X9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 AC129492.7-201ENST00000622992 756 ntBASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC40Q4G0X9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 KRT18P60-201ENST00000312876 1297 ntBASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 AC087393.1-201ENST00000582896 145 ntBASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms