Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC28.66■■■□□ 2.18
COL1A1P02452 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL1A1P02452 AC097639.1-201ENST00000565519 1891 ntBASIC28.66■■■□□ 2.18
COL1A1P02452 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC28.66■■■□□ 2.18
COL1A1P02452 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.66■■■□□ 2.18
COL1A1P02452 AF131216.4-201ENST00000638924 1588 ntBASIC28.66■■■□□ 2.18
COL1A1P02452 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL1A1P02452 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC28.65■■■□□ 2.18
COL1A1P02452 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL1A1P02452 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
COL1A1P02452 TSPY9P-201ENST00000440215 945 ntBASIC28.65■■■□□ 2.18
COL1A1P02452 TSPY11P-201ENST00000442607 1045 ntBASIC28.65■■■□□ 2.18
COL1A1P02452 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.65■■■□□ 2.18
COL1A1P02452 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
COL1A1P02452 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
COL1A1P02452 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL1A1P02452 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC28.64■■■□□ 2.17
COL1A1P02452 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL1A1P02452 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL1A1P02452 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
COL1A1P02452 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL1A1P02452 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.62■■■□□ 2.17
COL1A1P02452 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.62■■■□□ 2.17
COL1A1P02452 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.62■■■□□ 2.17
COL1A1P02452 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.62■■■□□ 2.17
COL1A1P02452 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC28.61■■■□□ 2.17
COL1A1P02452 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC28.61■■■□□ 2.17
COL1A1P02452 AL139246.5-201ENST00000606645 996 ntBASIC28.61■■■□□ 2.17
COL1A1P02452 AC092028.1-203ENST00000608262 953 ntBASIC28.61■■■□□ 2.17
COL1A1P02452 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL1A1P02452 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28.61■■■□□ 2.17
COL1A1P02452 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC28.6■■■□□ 2.17
COL1A1P02452 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL1A1P02452 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL1A1P02452 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL1A1P02452 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL1A1P02452 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL1A1P02452 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL1A1P02452 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.59■■■□□ 2.17
COL1A1P02452 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.59■■■□□ 2.17
COL1A1P02452 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC28.59■■■□□ 2.17
COL1A1P02452 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.59■■■□□ 2.17
COL1A1P02452 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL1A1P02452 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.59■■■□□ 2.17
COL1A1P02452 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.59■■■□□ 2.17
COL1A1P02452 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL1A1P02452 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL1A1P02452 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL1A1P02452 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC28.58■■■□□ 2.17
COL1A1P02452 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.58■■■□□ 2.17
COL1A1P02452 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
COL1A1P02452 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
COL1A1P02452 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.57■■■□□ 2.16
COL1A1P02452 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.57■■■□□ 2.16
COL1A1P02452 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.57■■■□□ 2.16
COL1A1P02452 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.57■■■□□ 2.16
COL1A1P02452 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.57■■■□□ 2.16
COL1A1P02452 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
COL1A1P02452 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.56■■■□□ 2.16
COL1A1P02452 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.56■■■□□ 2.16
COL1A1P02452 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL1A1P02452 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL1A1P02452 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.55■■■□□ 2.16
COL1A1P02452 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC28.55■■■□□ 2.16
COL1A1P02452 AL117332.1-201ENST00000622628 974 ntBASIC28.55■■■□□ 2.16
COL1A1P02452 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
COL1A1P02452 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL1A1P02452 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL1A1P02452 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL1A1P02452 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.53■■■□□ 2.16
COL1A1P02452 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.53■■■□□ 2.16
COL1A1P02452 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.53■■■□□ 2.16
COL1A1P02452 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.52■■■□□ 2.16
COL1A1P02452 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
COL1A1P02452 NALT1-201ENST00000429224 738 ntTSL 5 BASIC28.52■■■□□ 2.16
COL1A1P02452 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC28.52■■■□□ 2.16
COL1A1P02452 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC28.52■■■□□ 2.16
COL1A1P02452 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
COL1A1P02452 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC28.51■■■□□ 2.16
COL1A1P02452 DUSP8P4-201ENST00000399538 1761 ntBASIC28.51■■■□□ 2.15
COL1A1P02452 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.51■■■□□ 2.15
COL1A1P02452 AC090877.2-201ENST00000558441 1738 ntBASIC28.51■■■□□ 2.15
COL1A1P02452 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC28.51■■■□□ 2.15
COL1A1P02452 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.5■■■□□ 2.15
COL1A1P02452 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL1A1P02452 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC28.5■■■□□ 2.15
COL1A1P02452 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC28.5■■■□□ 2.15
COL1A1P02452 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.5■■■□□ 2.15
COL1A1P02452 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.5■■■□□ 2.15
COL1A1P02452 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms