Protein–RNA interactions for Protein: O60294

LCMT2, tRNA wybutosine-synthesizing protein 4, humanhuman

Known RBP Predictions only

Length 686 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LCMT2O60294 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
LCMT2O60294 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LCMT2O60294 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
LCMT2O60294 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
LCMT2O60294 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.54■■□□□ 1.2
LCMT2O60294 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.54■■□□□ 1.2
LCMT2O60294 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
LCMT2O60294 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.53■■□□□ 1.2
LCMT2O60294 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LCMT2O60294 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LCMT2O60294 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LCMT2O60294 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LCMT2O60294 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.53■■□□□ 1.2
LCMT2O60294 AC138932.3-201ENST00000567634 1902 ntBASIC22.53■■□□□ 1.2
LCMT2O60294 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.52■■□□□ 1.2
LCMT2O60294 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
LCMT2O60294 KRT8P33-201ENST00000508125 1423 ntBASIC22.52■■□□□ 1.2
LCMT2O60294 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LCMT2O60294 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.52■■□□□ 1.2
LCMT2O60294 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
LCMT2O60294 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.52■■□□□ 1.2
LCMT2O60294 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LCMT2O60294 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LCMT2O60294 AC142381.3-201ENST00000568208 1670 ntBASIC22.52■■□□□ 1.2
LCMT2O60294 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
LCMT2O60294 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LCMT2O60294 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LCMT2O60294 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LCMT2O60294 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LCMT2O60294 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.51■■□□□ 1.19
LCMT2O60294 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LCMT2O60294 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.5■■□□□ 1.19
LCMT2O60294 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LCMT2O60294 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.5■■□□□ 1.19
LCMT2O60294 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.5■■□□□ 1.19
LCMT2O60294 MIR4508-201ENST00000584178 70 ntBASIC22.5■■□□□ 1.19
LCMT2O60294 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LCMT2O60294 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.49■■□□□ 1.19
LCMT2O60294 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
LCMT2O60294 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.49■■□□□ 1.19
LCMT2O60294 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LCMT2O60294 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LCMT2O60294 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LCMT2O60294 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
LCMT2O60294 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
LCMT2O60294 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.48■■□□□ 1.19
LCMT2O60294 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LCMT2O60294 AC022616.5-201ENST00000518796 181 ntBASIC22.48■■□□□ 1.19
LCMT2O60294 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.48■■□□□ 1.19
LCMT2O60294 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LCMT2O60294 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.48■■□□□ 1.19
LCMT2O60294 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
LCMT2O60294 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
LCMT2O60294 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.47■■□□□ 1.19
LCMT2O60294 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LCMT2O60294 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LCMT2O60294 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LCMT2O60294 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
LCMT2O60294 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.46■■□□□ 1.19
LCMT2O60294 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
LCMT2O60294 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.46■■□□□ 1.19
LCMT2O60294 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
LCMT2O60294 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.46■■□□□ 1.19
LCMT2O60294 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.45■■□□□ 1.19
LCMT2O60294 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LCMT2O60294 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
LCMT2O60294 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LCMT2O60294 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.45■■□□□ 1.18
LCMT2O60294 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.45■■□□□ 1.18
LCMT2O60294 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.45■■□□□ 1.18
LCMT2O60294 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.45■■□□□ 1.18
LCMT2O60294 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
LCMT2O60294 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LCMT2O60294 YBX1P4-201ENST00000392794 808 ntBASIC22.44■■□□□ 1.18
LCMT2O60294 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.44■■□□□ 1.18
LCMT2O60294 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LCMT2O60294 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.44■■□□□ 1.18
LCMT2O60294 MIR6089-201ENST00000616698 64 ntBASIC22.44■■□□□ 1.18
LCMT2O60294 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LCMT2O60294 RARRES2P1-201ENST00000474487 481 ntBASIC22.43■■□□□ 1.18
LCMT2O60294 AC103724.3-201ENST00000564481 992 ntBASIC22.43■■□□□ 1.18
LCMT2O60294 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.43■■□□□ 1.18
LCMT2O60294 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.43■■□□□ 1.18
LCMT2O60294 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LCMT2O60294 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LCMT2O60294 AC090877.2-201ENST00000558441 1738 ntBASIC22.43■■□□□ 1.18
LCMT2O60294 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
LCMT2O60294 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.42■■□□□ 1.18
LCMT2O60294 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
LCMT2O60294 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LCMT2O60294 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.41■■□□□ 1.18
LCMT2O60294 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LCMT2O60294 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.41■■□□□ 1.18
LCMT2O60294 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.41■■□□□ 1.18
LCMT2O60294 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.41■■□□□ 1.18
LCMT2O60294 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LCMT2O60294 AP003733.4-201ENST00000623785 1697 ntBASIC22.4■■□□□ 1.18
LCMT2O60294 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
LCMT2O60294 KRT18P24-201ENST00000344739 1156 ntBASIC22.4■■□□□ 1.18
LCMT2O60294 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms