Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SGCEO43556 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SGCEO43556 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SGCEO43556 AC087393.1-201ENST00000582896 145 ntBASIC20.61■□□□□ 0.89
SGCEO43556 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SGCEO43556 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.61■□□□□ 0.89
SGCEO43556 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SGCEO43556 AP003733.4-201ENST00000623785 1697 ntBASIC20.61■□□□□ 0.89
SGCEO43556 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SGCEO43556 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.6■□□□□ 0.89
SGCEO43556 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.6■□□□□ 0.89
SGCEO43556 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.6■□□□□ 0.89
SGCEO43556 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SGCEO43556 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SGCEO43556 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SGCEO43556 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SGCEO43556 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SGCEO43556 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
SGCEO43556 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SGCEO43556 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SGCEO43556 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SGCEO43556 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.58■□□□□ 0.89
SGCEO43556 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SGCEO43556 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.58■□□□□ 0.89
SGCEO43556 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SGCEO43556 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SGCEO43556 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SGCEO43556 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SGCEO43556 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SGCEO43556 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.57■□□□□ 0.88
SGCEO43556 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.57■□□□□ 0.88
SGCEO43556 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.57■□□□□ 0.88
SGCEO43556 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.57■□□□□ 0.88
SGCEO43556 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SGCEO43556 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SGCEO43556 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SGCEO43556 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SGCEO43556 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.56■□□□□ 0.88
SGCEO43556 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SGCEO43556 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SGCEO43556 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SGCEO43556 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 DUX4L18-201ENST00000553347 1267 ntBASIC20.55■□□□□ 0.88
SGCEO43556 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.55■□□□□ 0.88
SGCEO43556 MIR6089-201ENST00000616698 64 ntBASIC20.55■□□□□ 0.88
SGCEO43556 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.55■□□□□ 0.88
SGCEO43556 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.55■□□□□ 0.88
SGCEO43556 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SGCEO43556 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SGCEO43556 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.54■□□□□ 0.88
SGCEO43556 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.54■□□□□ 0.88
SGCEO43556 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SGCEO43556 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.53■□□□□ 0.88
SGCEO43556 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.53■□□□□ 0.88
SGCEO43556 AC139795.1-202ENST00000500444 432 ntBASIC20.53■□□□□ 0.88
SGCEO43556 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.53■□□□□ 0.88
SGCEO43556 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.53■□□□□ 0.88
SGCEO43556 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SGCEO43556 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.52■□□□□ 0.88
SGCEO43556 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SGCEO43556 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SGCEO43556 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SGCEO43556 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.52■□□□□ 0.88
SGCEO43556 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.52■□□□□ 0.88
SGCEO43556 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SGCEO43556 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SGCEO43556 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SGCEO43556 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SGCEO43556 AL139125.2-201ENST00000623134 1869 ntBASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms