Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.34■■□□□ 1.65
LRRC53A6NM62 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.34■■□□□ 1.65
LRRC53A6NM62 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
LRRC53A6NM62 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.34■■□□□ 1.65
LRRC53A6NM62 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.33■■□□□ 1.65
LRRC53A6NM62 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
LRRC53A6NM62 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LRRC53A6NM62 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
LRRC53A6NM62 AC004812.2-201ENST00000611079 2094 ntBASIC25.32■■□□□ 1.64
LRRC53A6NM62 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LRRC53A6NM62 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.32■■□□□ 1.64
LRRC53A6NM62 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.32■■□□□ 1.64
LRRC53A6NM62 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LRRC53A6NM62 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.31■■□□□ 1.64
LRRC53A6NM62 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
LRRC53A6NM62 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
LRRC53A6NM62 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
LRRC53A6NM62 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
LRRC53A6NM62 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
LRRC53A6NM62 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRRC53A6NM62 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRRC53A6NM62 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRRC53A6NM62 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.29■■□□□ 1.64
LRRC53A6NM62 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.29■■□□□ 1.64
LRRC53A6NM62 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRRC53A6NM62 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
LRRC53A6NM62 FOXO3B-201ENST00000395675 1928 ntBASIC25.28■■□□□ 1.64
LRRC53A6NM62 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
LRRC53A6NM62 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
LRRC53A6NM62 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
LRRC53A6NM62 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
LRRC53A6NM62 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
LRRC53A6NM62 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.28■■□□□ 1.64
LRRC53A6NM62 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
LRRC53A6NM62 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.27■■□□□ 1.64
LRRC53A6NM62 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 HLA-L-211ENST00000482052 1765 ntBASIC25.27■■□□□ 1.64
LRRC53A6NM62 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
LRRC53A6NM62 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.27■■□□□ 1.64
LRRC53A6NM62 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.27■■□□□ 1.64
LRRC53A6NM62 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRRC53A6NM62 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
LRRC53A6NM62 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LRRC53A6NM62 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LRRC53A6NM62 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.26■■□□□ 1.63
LRRC53A6NM62 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
LRRC53A6NM62 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
LRRC53A6NM62 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
LRRC53A6NM62 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
LRRC53A6NM62 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRRC53A6NM62 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.24■■□□□ 1.63
LRRC53A6NM62 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
LRRC53A6NM62 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
LRRC53A6NM62 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
LRRC53A6NM62 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.24■■□□□ 1.63
LRRC53A6NM62 AC009831.1-201ENST00000580420 1582 ntBASIC25.24■■□□□ 1.63
LRRC53A6NM62 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.24■■□□□ 1.63
LRRC53A6NM62 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.24■■□□□ 1.63
LRRC53A6NM62 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.24■■□□□ 1.63
LRRC53A6NM62 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
LRRC53A6NM62 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.23■■□□□ 1.63
LRRC53A6NM62 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
LRRC53A6NM62 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.23■■□□□ 1.63
LRRC53A6NM62 HES4-204ENST00000484667 667 ntTSL 3 BASIC25.23■■□□□ 1.63
LRRC53A6NM62 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
LRRC53A6NM62 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
LRRC53A6NM62 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.23■■□□□ 1.63
LRRC53A6NM62 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
LRRC53A6NM62 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
LRRC53A6NM62 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
LRRC53A6NM62 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
LRRC53A6NM62 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
LRRC53A6NM62 ABCB10P4-201ENST00000566803 2184 ntBASIC25.22■■□□□ 1.63
LRRC53A6NM62 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
LRRC53A6NM62 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
LRRC53A6NM62 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 KRT18P10-201ENST00000388836 1287 ntBASIC25.21■■□□□ 1.63
LRRC53A6NM62 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.21■■□□□ 1.63
LRRC53A6NM62 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRRC53A6NM62 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
LRRC53A6NM62 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRRC53A6NM62 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
LRRC53A6NM62 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRRC53A6NM62 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms