Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
COL4A3BPQ9Y5P4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
COL4A3BPQ9Y5P4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.29■■■□□ 2.76
COL4A3BPQ9Y5P4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL4A3BPQ9Y5P4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
COL4A3BPQ9Y5P4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.23■■■□□ 2.75
COL4A3BPQ9Y5P4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
COL4A3BPQ9Y5P4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
COL4A3BPQ9Y5P4 AC145285.7-201ENST00000614819 1539 ntBASIC32.21■■■□□ 2.75
COL4A3BPQ9Y5P4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL4A3BPQ9Y5P4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
COL4A3BPQ9Y5P4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL4A3BPQ9Y5P4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL4A3BPQ9Y5P4 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.12■■■□□ 2.73
COL4A3BPQ9Y5P4 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
COL4A3BPQ9Y5P4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.11■■■□□ 2.73
COL4A3BPQ9Y5P4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
COL4A3BPQ9Y5P4 DYNLL1-208ENST00000550178 581 ntBASIC32.1■■■□□ 2.73
COL4A3BPQ9Y5P4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
COL4A3BPQ9Y5P4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL4A3BPQ9Y5P4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.06■■■□□ 2.72
COL4A3BPQ9Y5P4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL4A3BPQ9Y5P4 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.04■■■□□ 2.72
COL4A3BPQ9Y5P4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.03■■■□□ 2.72
COL4A3BPQ9Y5P4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.03■■■□□ 2.72
COL4A3BPQ9Y5P4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32■■■□□ 2.71
COL4A3BPQ9Y5P4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL4A3BPQ9Y5P4 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.71
COL4A3BPQ9Y5P4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL4A3BPQ9Y5P4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL4A3BPQ9Y5P4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.87■■■□□ 2.69
COL4A3BPQ9Y5P4 AL031258.1-201ENST00000623562 325 ntBASIC31.87■■■□□ 2.69
COL4A3BPQ9Y5P4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL4A3BPQ9Y5P4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
COL4A3BPQ9Y5P4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A3BPQ9Y5P4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A3BPQ9Y5P4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
COL4A3BPQ9Y5P4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
COL4A3BPQ9Y5P4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.82■■■□□ 2.68
COL4A3BPQ9Y5P4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A3BPQ9Y5P4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A3BPQ9Y5P4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL4A3BPQ9Y5P4 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL4A3BPQ9Y5P4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL4A3BPQ9Y5P4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL4A3BPQ9Y5P4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL4A3BPQ9Y5P4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.72■■■□□ 2.67
COL4A3BPQ9Y5P4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A3BPQ9Y5P4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A3BPQ9Y5P4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL4A3BPQ9Y5P4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL4A3BPQ9Y5P4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.67■■■□□ 2.66
COL4A3BPQ9Y5P4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.61■■■□□ 2.65
COL4A3BPQ9Y5P4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
COL4A3BPQ9Y5P4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.59■■■□□ 2.65
COL4A3BPQ9Y5P4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.59■■■□□ 2.65
COL4A3BPQ9Y5P4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.58■■■□□ 2.65
COL4A3BPQ9Y5P4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.57■■■□□ 2.64
COL4A3BPQ9Y5P4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.56■■■□□ 2.64
COL4A3BPQ9Y5P4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL4A3BPQ9Y5P4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL4A3BPQ9Y5P4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A3BPQ9Y5P4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.52■■■□□ 2.64
COL4A3BPQ9Y5P4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A3BPQ9Y5P4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A3BPQ9Y5P4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL4A3BPQ9Y5P4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL4A3BPQ9Y5P4 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL4A3BPQ9Y5P4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
COL4A3BPQ9Y5P4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL4A3BPQ9Y5P4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL4A3BPQ9Y5P4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL4A3BPQ9Y5P4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL4A3BPQ9Y5P4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL4A3BPQ9Y5P4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.42■■■□□ 2.62
COL4A3BPQ9Y5P4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.4■■■□□ 2.62
COL4A3BPQ9Y5P4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
COL4A3BPQ9Y5P4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL4A3BPQ9Y5P4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.36■■■□□ 2.61
COL4A3BPQ9Y5P4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL4A3BPQ9Y5P4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL4A3BPQ9Y5P4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL4A3BPQ9Y5P4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.33■■■□□ 2.61
COL4A3BPQ9Y5P4 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.32■■■□□ 2.6
COL4A3BPQ9Y5P4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL4A3BPQ9Y5P4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A3BPQ9Y5P4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL4A3BPQ9Y5P4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
COL4A3BPQ9Y5P4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A3BPQ9Y5P4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL4A3BPQ9Y5P4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
COL4A3BPQ9Y5P4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A3BPQ9Y5P4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.21■■■□□ 2.59
COL4A3BPQ9Y5P4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL4A3BPQ9Y5P4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.19■■■□□ 2.58
COL4A3BPQ9Y5P4 RARRES2P7-201ENST00000567349 469 ntBASIC31.19■■■□□ 2.58
COL4A3BPQ9Y5P4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.17■■■□□ 2.58
COL4A3BPQ9Y5P4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A3BPQ9Y5P4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.15■■■□□ 2.58
COL4A3BPQ9Y5P4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms