Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 BID-210ENST00000552886 330 ntTSL 316.45■□□□□ 0.221e-6■■■■■ 88
XRN2Q9H0D6 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.131e-6■■■■■ 88
XRN2Q9H0D6 BID-211ENST00000611040 419 ntTSL 1 (best) BASIC14.35□□□□□ -0.111e-6■■■■■ 88
XRN2Q9H0D6 GALNS-204ENST00000562831 609 ntTSL 329.64■■■□□ 2.343e-12■■■■■ 87.7
XRN2Q9H0D6 GALNS-207ENST00000565364 1075 ntTSL 1 (best)24.53■■□□□ 1.523e-12■■■■■ 87.7
XRN2Q9H0D6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.823e-12■■■■■ 86.7
XRN2Q9H0D6 GALNS-212ENST00000568613 1804 ntTSL 214.99□□□□□ -0.013e-12■■■■■ 86.7
XRN2Q9H0D6 GALNS-209ENST00000567525 1953 ntTSL 214□□□□□ -0.173e-12■■■■■ 86.7
XRN2Q9H0D6 EXOC7-210ENST00000460476 555 ntTSL 421.62■■□□□ 1.053e-10■■■■■ 84.9
XRN2Q9H0D6 EXOC7-214ENST00000486053 500 ntTSL 317.68■□□□□ 0.423e-10■■■■■ 84.9
XRN2Q9H0D6 EXOC7-215ENST00000494787 542 ntTSL 217.06■□□□□ 0.323e-10■■■■■ 84.9
XRN2Q9H0D6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.435e-15■■■■■ 76.9
XRN2Q9H0D6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.1■■□□□ 1.132e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-216ENST00000551059 474 ntTSL 221.94■■□□□ 1.12e-13■■■■■ 75.7
XRN2Q9H0D6 TBC1D9B-216ENST00000522224 532 ntTSL 521.89■■□□□ 1.092e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-214ENST00000550542 1245 ntTSL 521.82■■□□□ 1.082e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-219ENST00000552871 587 ntTSL 321.82■■□□□ 1.082e-13■■■■■ 75.7
XRN2Q9H0D6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.072e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.6■■□□□ 1.052e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-210ENST00000549384 891 ntTSL 521.23■□□□□ 0.992e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-203ENST00000504085 1123 ntTSL 1 (best)18.32■□□□□ 0.522e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.32■□□□□ 0.522e-13■■■■■ 75.7
XRN2Q9H0D6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.392e-13■■■■■ 75.7
XRN2Q9H0D6 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.372e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.16■□□□□ 0.342e-13■■■■■ 75.7
XRN2Q9H0D6 BRPF1-208ENST00000497565 689 ntTSL 315.56■□□□□ 0.082e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-213ENST00000514589 2443 ntTSL 214.73□□□□□ -0.052e-13■■■■■ 75.7
XRN2Q9H0D6 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC14.42□□□□□ -0.12e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-201ENST00000324439 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.482e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.572e-13■■■■■ 75.7
XRN2Q9H0D6 CORO1C-217ENST00000551550 547 ntTSL 411.04□□□□□ -0.642e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-209ENST00000513083 540 ntTSL 1 (best)9.68□□□□□ -0.862e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC9.68□□□□□ -0.862e-13■■■■■ 75.7
XRN2Q9H0D6 BRPF1-206ENST00000457855 4308 ntAPPRIS P3 TSL 2 BASIC8.94□□□□□ -0.982e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-211ENST00000513909 728 ntTSL 38.46□□□□□ -1.062e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-204ENST00000505105 1304 ntTSL 1 (best)6.76□□□□□ -1.332e-13■■■■■ 75.7
XRN2Q9H0D6 HIVEP1-207ENST00000491710 579 ntTSL 36.09□□□□□ -1.432e-13■■■■■ 75.7
XRN2Q9H0D6 RCHY1-212ENST00000514021 436 ntTSL 35.52□□□□□ -1.532e-13■■■■■ 75.7
XRN2Q9H0D6 EXOC7-212ENST00000467586 2393 ntTSL 217.1■□□□□ 0.332e-9■■■■■ 74.7
XRN2Q9H0D6 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.124e-16■■■■■ 74.1
XRN2Q9H0D6 LRRD1-202ENST00000422722 3511 ntTSL 210.97□□□□□ -0.654e-16■■■■■ 74.1
XRN2Q9H0D6 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC8.07□□□□□ -1.124e-16■■■■■ 74.1
XRN2Q9H0D6 CYP51A1-203ENST00000435873 556 ntTSL 43.28□□□□□ -1.884e-16■■■■■ 74.1
XRN2Q9H0D6 EXOC7-219ENST00000592559 645 ntTSL 513.73□□□□□ -0.213e-10■■■■■ 74.1
XRN2Q9H0D6 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.64■□□□□ 0.413e-12■■■■■ 73.3
XRN2Q9H0D6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.217e-7■■■■■ 72.5
XRN2Q9H0D6 TRMT44-208ENST00000532477 1851 ntTSL 216.33■□□□□ 0.27e-7■■■■■ 72.5
XRN2Q9H0D6 TRMT44-207ENST00000531038 541 ntTSL 315.03■□□□□ -07e-7■■■■■ 72.5
XRN2Q9H0D6 TRMT44-203ENST00000511149 508 ntTSL 411.51□□□□□ -0.577e-7■■■■■ 72.5
XRN2Q9H0D6 TRMT44-204ENST00000511366 4157 ntTSL 210.08□□□□□ -0.87e-7■■■■■ 72.5
XRN2Q9H0D6 TNRC18-201ENST00000328270 1220 ntTSL 525.42■■□□□ 1.669e-13■■■■■ 72.1
XRN2Q9H0D6 USP34-221ENST00000494867 795 ntTSL 313.22□□□□□ -0.299e-13■■■■■ 72.1
XRN2Q9H0D6 USP34-215ENST00000484179 927 ntTSL 35.58□□□□□ -1.529e-13■■■■■ 72.1
XRN2Q9H0D6 USP34-211ENST00000472706 556 ntTSL 44.67□□□□□ -1.669e-13■■■■■ 72.1
XRN2Q9H0D6 USP34-205ENST00000453734 2708 ntTSL 1 (best)3.07□□□□□ -1.929e-13■■■■■ 72.1
XRN2Q9H0D6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.339e-9■■■■■ 70.5
XRN2Q9H0D6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.229e-9■■■■■ 70.5
XRN2Q9H0D6 LIME1-208ENST00000493265 661 ntAPPRIS ALT2 TSL 219.48■□□□□ 0.719e-9■■■■■ 70.5
XRN2Q9H0D6 RRAS2-204ENST00000526717 815 ntTSL 326.97■■□□□ 1.914e-12■■■■■ 70.3
XRN2Q9H0D6 RRAS2-209ENST00000532950 888 ntTSL 325.54■■□□□ 1.684e-12■■■■■ 70.3
XRN2Q9H0D6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.684e-12■■■■■ 70.3
XRN2Q9H0D6 EEF1D-232ENST00000530445 1217 ntTSL 217.7■□□□□ 0.427e-24■■■■■ 70.3
XRN2Q9H0D6 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.97□□□□□ -1.614e-12■■■■■ 70.3
XRN2Q9H0D6 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.58□□□□□ -24e-12■■■■■ 70.3
XRN2Q9H0D6 SMAD2-208ENST00000587269 1042 ntTSL 335.42■■■■□ 3.263e-6■■■■■ 70.2
XRN2Q9H0D6 GNAS-256ENST00000603546 573 ntTSL 532.87■■■□□ 2.855e-7■■■■■ 69.4
XRN2Q9H0D6 SH3BP2-212ENST00000508338 491 ntTSL 330.87■■■□□ 2.534e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.364e-12■■■■■ 68.5
XRN2Q9H0D6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.81■■■□□ 2.24e-12■■■■■ 68.5
XRN2Q9H0D6 ZDHHC3-208ENST00000455235 537 ntTSL 428.35■■■□□ 2.134e-12■■■■■ 68.5
XRN2Q9H0D6 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.74e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.574e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.444e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-203ENST00000524628 612 ntTSL 217.36■□□□□ 0.374e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.194e-12■■■■■ 68.5
XRN2Q9H0D6 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.58□□□□□ -0.244e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-207ENST00000530204 586 ntTSL 510.86□□□□□ -0.674e-12■■■■■ 68.5
XRN2Q9H0D6 BANF1-204ENST00000524663 251 ntTSL 39.41□□□□□ -0.94e-12■■■■■ 68.5
XRN2Q9H0D6 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC14.76□□□□□ -0.053e-8■■■■■ 67.9
XRN2Q9H0D6 MEMO1-208ENST00000437854 315 ntTSL 517.08■□□□□ 0.324e-8■■■■■ 67.3
XRN2Q9H0D6 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.91■□□□□ 0.32e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-203ENST00000357231 1924 ntTSL 1 (best)13.54□□□□□ -0.242e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-205ENST00000405575 2208 ntTSL 5 BASIC13.47□□□□□ -0.252e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-207ENST00000411744 2031 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.352e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-221ENST00000634349 2124 ntTSL 1 (best) BASIC11.32□□□□□ -0.62e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-202ENST00000335146 3519 ntTSL 1 (best) BASIC10.87□□□□□ -0.672e-9■■■■■ 66.5
XRN2Q9H0D6 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC8.8□□□□□ -12e-9■■■■■ 66.5
XRN2Q9H0D6 RAP1GAP-208ENST00000464457 409 ntTSL 310.25□□□□□ -0.774e-8■■■■■ 65.2
XRN2Q9H0D6 SMARCD2-210ENST00000584400 1017 ntTSL 331.94■■■□□ 2.72e-11■■■■■ 64.9
XRN2Q9H0D6 YBX1-202ENST00000332220 776 ntTSL 524.13■■□□□ 1.452e-11■■■■■ 64.9
XRN2Q9H0D6 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.42e-11■■■■■ 64.9
XRN2Q9H0D6 YBX1-203ENST00000436427 1524 ntTSL 1 (best)23.68■■□□□ 1.382e-11■■■■■ 64.9
XRN2Q9H0D6 SF1-213ENST00000472725 632 ntTSL 322.87■■□□□ 1.252e-11■■■■■ 64.9
XRN2Q9H0D6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.11■■□□□ 1.132e-11■■■■■ 64.9
XRN2Q9H0D6 YBX1-204ENST00000467957 770 ntTSL 221.92■■□□□ 1.12e-11■■■■■ 64.9
XRN2Q9H0D6 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.85■□□□□ 0.772e-11■■■■■ 64.9
XRN2Q9H0D6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.712e-11■■■■■ 64.9
XRN2Q9H0D6 SMARCD2-205ENST00000577686 394 ntTSL 317.41■□□□□ 0.382e-11■■■■■ 64.9
XRN2Q9H0D6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.322e-11■■■■■ 64.9
XRN2Q9H0D6 BRAT1-206ENST00000493232 5360 ntTSL 216.53■□□□□ 0.242e-11■■■■■ 64.9
Retrieved 100 of 21,068 protein–RNA pairs in 57 ms