RNA–Protein interactions for RNA: ENST00000493232.5

BRAT1-206, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 2

Gene BRAT1, Length 5,360 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-206ENST00000493232 DCAF8L2P0C7V8 631 aa28.16■■■□□ 2.1
BRAT1-206ENST00000493232 NISCHQ9Y2I1 1504 aa26.68■■□□□ 1.86
BRAT1-206ENST00000493232 SUPT5HO00267 1087 aaKnown RBP26.65■■□□□ 1.86
BRAT1-206ENST00000493232 SHROOM4Q9ULL8 1493 aa26.07■■□□□ 1.76
BRAT1-206ENST00000493232 PELP1Q8IZL8 1130 aaKnown RBP25.76■■□□□ 1.71
BRAT1-206ENST00000493232 EHMT2Q96KQ7 1210 aa25.73■■□□□ 1.71
BRAT1-206ENST00000493232 APLP2Q06481 763 aa25.71■■□□□ 1.71
BRAT1-206ENST00000493232 FAM9AQ8IZU1 332 aaPredicted RBP25.48■■□□□ 1.67
BRAT1-206ENST00000493232 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
BRAT1-206ENST00000493232 PCGF6Q9BYE7 350 aa24.82■■□□□ 1.56
BRAT1-206ENST00000493232 TRIM41Q8WV44 630 aa24.79■■□□□ 1.56
BRAT1-206ENST00000493232 ZEB1P37275 1124 aaPredicted RBP24.76■■□□□ 1.55
BRAT1-206ENST00000493232 RANGAP1P46060 587 aaPredicted RBP24.72■■□□□ 1.55
BRAT1-206ENST00000493232 CENPBP07199 599 aaPredicted RBP24.69■■□□□ 1.54
BRAT1-206ENST00000493232 ATP1B4Q9UN42 357 aaPredicted RBP24.66■■□□□ 1.54
BRAT1-206ENST00000493232 CCER1Q8TC90 406 aaPredicted RBP24.62■■□□□ 1.53
BRAT1-206ENST00000493232 UBTFP17480 764 aaKnown RBP24.56■■□□□ 1.52
BRAT1-206ENST00000493232 ERICH6Q7L0X2 663 aa24.55■■□□□ 1.52
BRAT1-206ENST00000493232 NEFLP07196 543 aa24.27■■□□□ 1.48
BRAT1-206ENST00000493232 YTHDC1Q96MU7 727 aaKnown RBP23.95■■□□□ 1.42
BRAT1-206ENST00000493232 TRIM26Q12899 539 aaPredicted RBP23.89■■□□□ 1.42
BRAT1-206ENST00000493232 MYT1LQ9UL68 1186 aa23.85■■□□□ 1.41
BRAT1-206ENST00000493232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.84■■□□□ 1.41
BRAT1-206ENST00000493232 HNRNPUL2Q1KMD3 747 aaKnown RBP23.84■■□□□ 1.41
BRAT1-206ENST00000493232 PPARGC1BQ86YN6 1023 aaKnown RBP23.84■■□□□ 1.41
BRAT1-206ENST00000493232 ITGAEP38570 1179 aa23.71■■□□□ 1.39
BRAT1-206ENST00000493232 MYT1Q01538 1121 aa23.7■■□□□ 1.39
BRAT1-206ENST00000493232 POLR3GLQ9BT43 218 aa23.64■■□□□ 1.37
BRAT1-206ENST00000493232 DAXXQ9UER7 740 aaPredicted RBP23.62■■□□□ 1.37
BRAT1-206ENST00000493232 HRCP23327 699 aa23.5■■□□□ 1.35
BRAT1-206ENST00000493232 CHIC1Q5VXU3 224 aa23.47■■□□□ 1.35
BRAT1-206ENST00000493232 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
BRAT1-206ENST00000493232 SLC4A1APQ9BWU0 796 aaKnown RBP23.28■■□□□ 1.32
BRAT1-206ENST00000493232 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
BRAT1-206ENST00000493232 ABCC9O60706 1549 aa23.19■■□□□ 1.3
BRAT1-206ENST00000493232 FAM50AQ14320 339 aaKnown RBP23.18■■□□□ 1.3
BRAT1-206ENST00000493232 TRIM52Q96A61 297 aa23.11■■□□□ 1.29
BRAT1-206ENST00000493232 CLSPNQ9HAW4 1339 aa23.08■■□□□ 1.28
BRAT1-206ENST00000493232 DIEXFQ68CQ4 756 aaKnown RBP23.04■■□□□ 1.28
BRAT1-206ENST00000493232 PABPN1Q86U42 306 aaKnown RBP eCLIP23.04■■□□□ 1.28
BRAT1-206ENST00000493232 ZNF316A6NFI3 1004 aaPredicted RBP23.03■■□□□ 1.28
BRAT1-206ENST00000493232 RTL5Q5HYW3 569 aaPredicted RBP22.97■■□□□ 1.27
BRAT1-206ENST00000493232 NEUROD1Q13562 356 aa22.9■■□□□ 1.26
BRAT1-206ENST00000493232 ANP32CO43423 234 aa22.81■■□□□ 1.24
BRAT1-206ENST00000493232 FBLN2P98095 1184 aa22.8■■□□□ 1.24
BRAT1-206ENST00000493232 ZNF326Q5BKZ1 582 aaKnown RBP22.79■■□□□ 1.24
BRAT1-206ENST00000493232 ZBTB47Q9UFB7 747 aaPredicted RBP22.78■■□□□ 1.24
BRAT1-206ENST00000493232 NEFMP07197 916 aa22.64■■□□□ 1.21
BRAT1-206ENST00000493232 CDK11AQ9UQ88 783 aaPredicted RBP22.59■■□□□ 1.21
BRAT1-206ENST00000493232 CANXP27824 592 aaKnown RBP22.57■■□□□ 1.2
BRAT1-206ENST00000493232 CSRNP3Q8WYN3 585 aa22.57■■□□□ 1.2
BRAT1-206ENST00000493232 BCANQ96GW7 911 aa22.54■■□□□ 1.2
BRAT1-206ENST00000493232 P3H3Q8IVL6 736 aa22.5■■□□□ 1.19
BRAT1-206ENST00000493232 SLC24A1O60721 1099 aa22.48■■□□□ 1.19
BRAT1-206ENST00000493232 ZNF777Q9ULD5 760 aaPredicted RBP22.44■■□□□ 1.18
BRAT1-206ENST00000493232 ARID3CA6NKF2 412 aa22.43■■□□□ 1.18
BRAT1-206ENST00000493232 GTF3C3Q9Y5Q9 886 aa22.43■■□□□ 1.18
BRAT1-206ENST00000493232 ESF1Q9H501 851 aaKnown RBP22.38■■□□□ 1.17
BRAT1-206ENST00000493232 BCL11AQ9H165 835 aa22.27■■□□□ 1.16
BRAT1-206ENST00000493232 TONSLQ96HA7 1378 aa22.26■■□□□ 1.15
BRAT1-206ENST00000493232 ANP32AP39687 249 aaKnown RBP22.25■■□□□ 1.15
BRAT1-206ENST00000493232 NPM1P06748 294 aaKnown RBP eCLIP22.23■■□□□ 1.15
BRAT1-206ENST00000493232 STAG3Q9UJ98 1225 aa22.22■■□□□ 1.15
BRAT1-206ENST00000493232 SCRIBQ14160 1630 aa22.2■■□□□ 1.15
BRAT1-206ENST00000493232 CHGAP10645 457 aaKnown RBP22.17■■□□□ 1.14
BRAT1-206ENST00000493232 CCDC180Q9P1Z9 1646 aa22.17■■□□□ 1.14
BRAT1-206ENST00000493232 ACIN1Q9UKV3 1341 aaKnown RBP22.13■■□□□ 1.13
BRAT1-206ENST00000493232 ZCCHC6Q5VYS8 1495 aaKnown RBP22.05■■□□□ 1.12
BRAT1-206ENST00000493232 UPF2Q9HAU5 1272 aaKnown RBP22.03■■□□□ 1.12
BRAT1-206ENST00000493232 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.11
BRAT1-206ENST00000493232 ANP32BQ92688 251 aaKnown RBP22■■□□□ 1.11
BRAT1-206ENST00000493232 HSP90AA1P07900 732 aaKnown RBP21.99■■□□□ 1.11
BRAT1-206ENST00000493232 HNRNPUQ00839 825 aaKnown RBP eCLIP21.99■■□□□ 1.11
BRAT1-206ENST00000493232 TSPY4P0CV99 314 aa21.98■■□□□ 1.11
BRAT1-206ENST00000493232 TSPY10P0CW01 314 aa21.98■■□□□ 1.11
BRAT1-206ENST00000493232 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.95■■□□□ 1.1
BRAT1-206ENST00000493232 DCAF1Q9Y4B6 1507 aa21.95■■□□□ 1.1
BRAT1-206ENST00000493232 FKBP8Q14318 412 aa21.94■■□□□ 1.1
BRAT1-206ENST00000493232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.94■■□□□ 1.12e-6■□□□□ 8.5
BRAT1-206ENST00000493232 FAM9BQ8IZU0 186 aa21.93■■□□□ 1.1
BRAT1-206ENST00000493232 DDX10Q13206 875 aaKnown RBP21.93■■□□□ 1.1
BRAT1-206ENST00000493232 CHIC2Q9UKJ5 165 aa21.93■■□□□ 1.1
BRAT1-206ENST00000493232 TMC1Q8TDI8 760 aa21.92■■□□□ 1.1
BRAT1-206ENST00000493232 MTUS2Q5JR59 1369 aa21.91■■□□□ 1.1
BRAT1-206ENST00000493232 PLPPR3Q6T4P5 718 aa21.89■■□□□ 1.1
BRAT1-206ENST00000493232 WDR43Q15061 677 aaKnown RBP eCLIP21.89■■□□□ 1.09
BRAT1-206ENST00000493232 CHMP7Q8WUX9 453 aaPredicted RBP21.85■■□□□ 1.09
BRAT1-206ENST00000493232 RB1CC1Q8TDY2 1594 aa21.83■■□□□ 1.08
BRAT1-206ENST00000493232 CCDC136Q96JN2 1154 aa21.79■■□□□ 1.08
BRAT1-206ENST00000493232 SALL2Q9Y467 1007 aaPredicted RBP21.79■■□□□ 1.08
BRAT1-206ENST00000493232 MRS2Q9HD23 443 aa21.77■■□□□ 1.08
BRAT1-206ENST00000493232 KDM2AQ9Y2K7 1162 aa21.77■■□□□ 1.08
BRAT1-206ENST00000493232 CLIP1P30622 1438 aa21.75■■□□□ 1.07
BRAT1-206ENST00000493232 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
BRAT1-206ENST00000493232 MYH16Q9H6N6 1097 aa21.7■■□□□ 1.06
BRAT1-206ENST00000493232 EIF4G2P78344 907 aaKnown RBP eCLIP21.69■■□□□ 1.06
BRAT1-206ENST00000493232 EEA1Q15075 1411 aa21.68■■□□□ 1.06
BRAT1-206ENST00000493232 PLEKHD1A6NEE1 506 aa21.65■■□□□ 1.06
BRAT1-206ENST00000493232 PPP1R15AO75807 674 aaPredicted RBP21.64■■□□□ 1.05
BRAT1-206ENST00000493232 SCAF1Q9H7N4 1312 aaKnown RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms