Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.18■■■□□ 2.74
CDX2Q99626 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CDX2Q99626 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CDX2Q99626 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
CDX2Q99626 AC097358.2-201ENST00000607541 1159 ntBASIC32.08■■■□□ 2.73
CDX2Q99626 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
CDX2Q99626 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CDX2Q99626 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CDX2Q99626 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CDX2Q99626 SUZ12P1-203ENST00000578195 985 ntBASIC31.93■■■□□ 2.7
CDX2Q99626 AC136428.2-201ENST00000563187 214 ntBASIC31.9■■■□□ 2.7
CDX2Q99626 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
CDX2Q99626 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CDX2Q99626 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.83■■■□□ 2.69
CDX2Q99626 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.83■■■□□ 2.69
CDX2Q99626 SETD8P1-201ENST00000623146 1180 ntBASIC31.77■■■□□ 2.68
CDX2Q99626 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CDX2Q99626 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CDX2Q99626 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CDX2Q99626 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.69■■■□□ 2.66
CDX2Q99626 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CDX2Q99626 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDX2Q99626 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
CDX2Q99626 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.67■■■□□ 2.66
CDX2Q99626 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CDX2Q99626 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CDX2Q99626 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.61■■■□□ 2.65
CDX2Q99626 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CDX2Q99626 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CDX2Q99626 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CDX2Q99626 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.54■■■□□ 2.64
CDX2Q99626 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.53■■■□□ 2.64
CDX2Q99626 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
CDX2Q99626 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.5■■■□□ 2.63
CDX2Q99626 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
CDX2Q99626 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.48■■■□□ 2.63
CDX2Q99626 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.47■■■□□ 2.63
CDX2Q99626 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CDX2Q99626 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.44■■■□□ 2.62
CDX2Q99626 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.44■■■□□ 2.62
CDX2Q99626 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDX2Q99626 AL162393.1-201ENST00000437852 946 ntBASIC31.42■■■□□ 2.62
CDX2Q99626 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDX2Q99626 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CDX2Q99626 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CDX2Q99626 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.38■■■□□ 2.61
CDX2Q99626 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.37■■■□□ 2.61
CDX2Q99626 MIR7108-201ENST00000614319 87 ntBASIC31.37■■■□□ 2.61
CDX2Q99626 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDX2Q99626 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.34■■■□□ 2.61
CDX2Q99626 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.32■■■□□ 2.6
CDX2Q99626 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CDX2Q99626 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CDX2Q99626 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.26■■■□□ 2.59
CDX2Q99626 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CDX2Q99626 ABHD17AP4-201ENST00000411545 909 ntBASIC31.24■■■□□ 2.59
CDX2Q99626 AP006261.1-201ENST00000584783 668 ntBASIC31.24■■■□□ 2.59
CDX2Q99626 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CDX2Q99626 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.23■■■□□ 2.59
CDX2Q99626 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.22■■■□□ 2.59
CDX2Q99626 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CDX2Q99626 CAHM-201ENST00000604200 896 ntBASIC31.14■■■□□ 2.58
CDX2Q99626 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CDX2Q99626 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.13■■■□□ 2.57
CDX2Q99626 HLA-V-202ENST00000446817 847 ntBASIC31.11■■■□□ 2.57
CDX2Q99626 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.08■■■□□ 2.57
CDX2Q99626 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CDX2Q99626 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.07■■■□□ 2.56
CDX2Q99626 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CDX2Q99626 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.06■■■□□ 2.56
CDX2Q99626 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CDX2Q99626 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CDX2Q99626 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CDX2Q99626 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.03■■■□□ 2.56
CDX2Q99626 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.02■■■□□ 2.56
CDX2Q99626 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31■■■□□ 2.55
CDX2Q99626 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
CDX2Q99626 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CDX2Q99626 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CDX2Q99626 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CDX2Q99626 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.96■■■□□ 2.55
CDX2Q99626 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.94■■■□□ 2.54
CDX2Q99626 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CDX2Q99626 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CDX2Q99626 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CDX2Q99626 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.91■■■□□ 2.54
CDX2Q99626 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CDX2Q99626 AL391121.1-201ENST00000607967 1349 ntBASIC30.87■■■□□ 2.53
CDX2Q99626 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.87■■■□□ 2.53
CDX2Q99626 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
CDX2Q99626 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.85■■■□□ 2.53
CDX2Q99626 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.84■■■□□ 2.53
CDX2Q99626 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CDX2Q99626 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CDX2Q99626 MIR3665-201ENST00000578708 105 ntBASIC30.79■■■□□ 2.52
CDX2Q99626 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.77■■■□□ 2.52
CDX2Q99626 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.77■■■□□ 2.52
CDX2Q99626 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.76■■■□□ 2.51
CDX2Q99626 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.74■■■□□ 2.51
CDX2Q99626 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 2220.8 ms