Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.69■■■□□ 2.5
SHKBP1Q8TBC3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.66■■■□□ 2.5
SHKBP1Q8TBC3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHKBP1Q8TBC3 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHKBP1Q8TBC3 AL031258.1-201ENST00000623562 325 ntBASIC30.61■■■□□ 2.49
SHKBP1Q8TBC3 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHKBP1Q8TBC3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
SHKBP1Q8TBC3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHKBP1Q8TBC3 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHKBP1Q8TBC3 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHKBP1Q8TBC3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHKBP1Q8TBC3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.51■■■□□ 2.47
SHKBP1Q8TBC3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.49■■■□□ 2.47
SHKBP1Q8TBC3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.44■■■□□ 2.46
SHKBP1Q8TBC3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
SHKBP1Q8TBC3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.39■■■□□ 2.46
SHKBP1Q8TBC3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.39■■■□□ 2.46
SHKBP1Q8TBC3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.45
SHKBP1Q8TBC3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHKBP1Q8TBC3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
SHKBP1Q8TBC3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHKBP1Q8TBC3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHKBP1Q8TBC3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHKBP1Q8TBC3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.27■■■□□ 2.44
SHKBP1Q8TBC3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHKBP1Q8TBC3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SHKBP1Q8TBC3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.24■■■□□ 2.43
SHKBP1Q8TBC3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
SHKBP1Q8TBC3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.22■■■□□ 2.43
SHKBP1Q8TBC3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHKBP1Q8TBC3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHKBP1Q8TBC3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.16■■■□□ 2.42
SHKBP1Q8TBC3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHKBP1Q8TBC3 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.12■■■□□ 2.41
SHKBP1Q8TBC3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.1■■■□□ 2.41
SHKBP1Q8TBC3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
SHKBP1Q8TBC3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.08■■■□□ 2.41
SHKBP1Q8TBC3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.41
SHKBP1Q8TBC3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHKBP1Q8TBC3 RARRES2P7-201ENST00000567349 469 ntBASIC30.07■■■□□ 2.4
SHKBP1Q8TBC3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.05■■■□□ 2.4
SHKBP1Q8TBC3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.01■■■□□ 2.39
SHKBP1Q8TBC3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
SHKBP1Q8TBC3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
SHKBP1Q8TBC3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SHKBP1Q8TBC3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SHKBP1Q8TBC3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.93■■■□□ 2.38
SHKBP1Q8TBC3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SHKBP1Q8TBC3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.92■■■□□ 2.38
SHKBP1Q8TBC3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.91■■■□□ 2.38
SHKBP1Q8TBC3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SHKBP1Q8TBC3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.9■■■□□ 2.38
SHKBP1Q8TBC3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.89■■■□□ 2.38
SHKBP1Q8TBC3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.86■■■□□ 2.37
SHKBP1Q8TBC3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.84■■■□□ 2.37
SHKBP1Q8TBC3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.84■■■□□ 2.37
SHKBP1Q8TBC3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.83■■■□□ 2.37
SHKBP1Q8TBC3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.83■■■□□ 2.37
SHKBP1Q8TBC3 AC145285.7-201ENST00000614819 1539 ntBASIC29.82■■■□□ 2.36
SHKBP1Q8TBC3 SETD8P1-201ENST00000623146 1180 ntBASIC29.82■■■□□ 2.36
SHKBP1Q8TBC3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.81■■■□□ 2.36
SHKBP1Q8TBC3 AC097358.2-201ENST00000607541 1159 ntBASIC29.81■■■□□ 2.36
SHKBP1Q8TBC3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHKBP1Q8TBC3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHKBP1Q8TBC3 AC136428.2-201ENST00000563187 214 ntBASIC29.77■■■□□ 2.36
SHKBP1Q8TBC3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHKBP1Q8TBC3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.76■■■□□ 2.35
SHKBP1Q8TBC3 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.74■■■□□ 2.35
SHKBP1Q8TBC3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHKBP1Q8TBC3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.72■■■□□ 2.35
SHKBP1Q8TBC3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SHKBP1Q8TBC3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.71■■■□□ 2.35
SHKBP1Q8TBC3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SHKBP1Q8TBC3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHKBP1Q8TBC3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SHKBP1Q8TBC3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.61■■■□□ 2.33
SHKBP1Q8TBC3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHKBP1Q8TBC3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.6■■■□□ 2.33
SHKBP1Q8TBC3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.6■■■□□ 2.33
SHKBP1Q8TBC3 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHKBP1Q8TBC3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.6■■■□□ 2.33
SHKBP1Q8TBC3 SUZ12P1-203ENST00000578195 985 ntBASIC29.59■■■□□ 2.33
SHKBP1Q8TBC3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SHKBP1Q8TBC3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.58■■■□□ 2.33
SHKBP1Q8TBC3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.57■■■□□ 2.32
SHKBP1Q8TBC3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.53■■■□□ 2.32
SHKBP1Q8TBC3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHKBP1Q8TBC3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHKBP1Q8TBC3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
SHKBP1Q8TBC3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHKBP1Q8TBC3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHKBP1Q8TBC3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHKBP1Q8TBC3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHKBP1Q8TBC3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SHKBP1Q8TBC3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHKBP1Q8TBC3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHKBP1Q8TBC3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHKBP1Q8TBC3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.43■■■□□ 2.3
SHKBP1Q8TBC3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHKBP1Q8TBC3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms