Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
VPS52Q8N1B4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
VPS52Q8N1B4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
VPS52Q8N1B4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
VPS52Q8N1B4 AL031258.1-201ENST00000623562 325 ntBASIC31.41■■■□□ 2.62
VPS52Q8N1B4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
VPS52Q8N1B4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
VPS52Q8N1B4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.35■■■□□ 2.61
VPS52Q8N1B4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
VPS52Q8N1B4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
VPS52Q8N1B4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.27■■■□□ 2.6
VPS52Q8N1B4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.23■■■□□ 2.59
VPS52Q8N1B4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.23■■■□□ 2.59
VPS52Q8N1B4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VPS52Q8N1B4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS52Q8N1B4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
VPS52Q8N1B4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.18■■■□□ 2.58
VPS52Q8N1B4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS52Q8N1B4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
VPS52Q8N1B4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
VPS52Q8N1B4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.12■■■□□ 2.57
VPS52Q8N1B4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.1■■■□□ 2.57
VPS52Q8N1B4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
VPS52Q8N1B4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.05■■■□□ 2.56
VPS52Q8N1B4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
VPS52Q8N1B4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VPS52Q8N1B4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.02■■■□□ 2.56
VPS52Q8N1B4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
VPS52Q8N1B4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.97■■■□□ 2.55
VPS52Q8N1B4 RARRES2P7-201ENST00000567349 469 ntBASIC30.95■■■□□ 2.55
VPS52Q8N1B4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
VPS52Q8N1B4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
VPS52Q8N1B4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.94■■■□□ 2.54
VPS52Q8N1B4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.93■■■□□ 2.54
VPS52Q8N1B4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
VPS52Q8N1B4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
VPS52Q8N1B4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.92■■■□□ 2.54
VPS52Q8N1B4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
VPS52Q8N1B4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.88■■■□□ 2.53
VPS52Q8N1B4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.86■■■□□ 2.53
VPS52Q8N1B4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
VPS52Q8N1B4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
VPS52Q8N1B4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.85■■■□□ 2.53
VPS52Q8N1B4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
VPS52Q8N1B4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.78■■■□□ 2.52
VPS52Q8N1B4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.78■■■□□ 2.52
VPS52Q8N1B4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
VPS52Q8N1B4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.73■■■□□ 2.51
VPS52Q8N1B4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
VPS52Q8N1B4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.71■■■□□ 2.51
VPS52Q8N1B4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.71■■■□□ 2.51
VPS52Q8N1B4 AC097358.2-201ENST00000607541 1159 ntBASIC30.7■■■□□ 2.51
VPS52Q8N1B4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
VPS52Q8N1B4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
VPS52Q8N1B4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
VPS52Q8N1B4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.66■■■□□ 2.5
VPS52Q8N1B4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.66■■■□□ 2.5
VPS52Q8N1B4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.66■■■□□ 2.5
VPS52Q8N1B4 SETD8P1-201ENST00000623146 1180 ntBASIC30.66■■■□□ 2.5
VPS52Q8N1B4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
VPS52Q8N1B4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
VPS52Q8N1B4 AC136428.2-201ENST00000563187 214 ntBASIC30.61■■■□□ 2.49
VPS52Q8N1B4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
VPS52Q8N1B4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.56■■■□□ 2.48
VPS52Q8N1B4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.54■■■□□ 2.48
VPS52Q8N1B4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.54■■■□□ 2.48
VPS52Q8N1B4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
VPS52Q8N1B4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
VPS52Q8N1B4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
VPS52Q8N1B4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
VPS52Q8N1B4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS52Q8N1B4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
VPS52Q8N1B4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
VPS52Q8N1B4 AC145285.7-201ENST00000614819 1539 ntBASIC30.44■■■□□ 2.46
VPS52Q8N1B4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
VPS52Q8N1B4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.44■■■□□ 2.46
VPS52Q8N1B4 SUZ12P1-203ENST00000578195 985 ntBASIC30.44■■■□□ 2.46
VPS52Q8N1B4 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.43■■■□□ 2.46
VPS52Q8N1B4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.43■■■□□ 2.46
VPS52Q8N1B4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.42■■■□□ 2.46
VPS52Q8N1B4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.4■■■□□ 2.46
VPS52Q8N1B4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.39■■■□□ 2.46
VPS52Q8N1B4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
VPS52Q8N1B4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.36■■■□□ 2.45
VPS52Q8N1B4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
VPS52Q8N1B4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
VPS52Q8N1B4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
VPS52Q8N1B4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.29■■■□□ 2.44
VPS52Q8N1B4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
VPS52Q8N1B4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
VPS52Q8N1B4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
VPS52Q8N1B4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
VPS52Q8N1B4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
VPS52Q8N1B4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
VPS52Q8N1B4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
VPS52Q8N1B4 RPS2P35-201ENST00000443417 897 ntBASIC30.24■■■□□ 2.43
VPS52Q8N1B4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
VPS52Q8N1B4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
VPS52Q8N1B4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
VPS52Q8N1B4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.21■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms