Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.2■■■□□ 2.75
CNKSR3Q6P9H4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CNKSR3Q6P9H4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.15■■■□□ 2.74
CNKSR3Q6P9H4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.14■■■□□ 2.74
CNKSR3Q6P9H4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CNKSR3Q6P9H4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.12■■■□□ 2.73
CNKSR3Q6P9H4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.11■■■□□ 2.73
CNKSR3Q6P9H4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
CNKSR3Q6P9H4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.07■■■□□ 2.72
CNKSR3Q6P9H4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.07■■■□□ 2.72
CNKSR3Q6P9H4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.06■■■□□ 2.72
CNKSR3Q6P9H4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
CNKSR3Q6P9H4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CNKSR3Q6P9H4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.01■■■□□ 2.71
CNKSR3Q6P9H4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.99■■■□□ 2.71
CNKSR3Q6P9H4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.99■■■□□ 2.71
CNKSR3Q6P9H4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.98■■■□□ 2.71
CNKSR3Q6P9H4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.95■■■□□ 2.71
CNKSR3Q6P9H4 RARRES2P7-201ENST00000567349 469 ntBASIC31.95■■■□□ 2.71
CNKSR3Q6P9H4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CNKSR3Q6P9H4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CNKSR3Q6P9H4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CNKSR3Q6P9H4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.83■■■□□ 2.69
CNKSR3Q6P9H4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.77■■■□□ 2.68
CNKSR3Q6P9H4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.76■■■□□ 2.67
CNKSR3Q6P9H4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
CNKSR3Q6P9H4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.74■■■□□ 2.67
CNKSR3Q6P9H4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
CNKSR3Q6P9H4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.72■■■□□ 2.67
CNKSR3Q6P9H4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CNKSR3Q6P9H4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.71■■■□□ 2.67
CNKSR3Q6P9H4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.71■■■□□ 2.67
CNKSR3Q6P9H4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
CNKSR3Q6P9H4 AC097358.2-201ENST00000607541 1159 ntBASIC31.7■■■□□ 2.67
CNKSR3Q6P9H4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CNKSR3Q6P9H4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CNKSR3Q6P9H4 SETD8P1-201ENST00000623146 1180 ntBASIC31.62■■■□□ 2.65
CNKSR3Q6P9H4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
CNKSR3Q6P9H4 AC136428.2-201ENST00000563187 214 ntBASIC31.6■■■□□ 2.65
CNKSR3Q6P9H4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.57■■■□□ 2.64
CNKSR3Q6P9H4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CNKSR3Q6P9H4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.57■■■□□ 2.64
CNKSR3Q6P9H4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.55■■■□□ 2.64
CNKSR3Q6P9H4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CNKSR3Q6P9H4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CNKSR3Q6P9H4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CNKSR3Q6P9H4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.47■■■□□ 2.63
CNKSR3Q6P9H4 SUZ12P1-203ENST00000578195 985 ntBASIC31.47■■■□□ 2.63
CNKSR3Q6P9H4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
CNKSR3Q6P9H4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CNKSR3Q6P9H4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.41■■■□□ 2.62
CNKSR3Q6P9H4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.41■■■□□ 2.62
CNKSR3Q6P9H4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CNKSR3Q6P9H4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CNKSR3Q6P9H4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CNKSR3Q6P9H4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.37■■■□□ 2.61
CNKSR3Q6P9H4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.35■■■□□ 2.61
CNKSR3Q6P9H4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CNKSR3Q6P9H4 RPS2P35-201ENST00000443417 897 ntBASIC31.32■■■□□ 2.6
CNKSR3Q6P9H4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.32■■■□□ 2.6
CNKSR3Q6P9H4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CNKSR3Q6P9H4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.31■■■□□ 2.6
CNKSR3Q6P9H4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.28■■■□□ 2.6
CNKSR3Q6P9H4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CNKSR3Q6P9H4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CNKSR3Q6P9H4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
CNKSR3Q6P9H4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CNKSR3Q6P9H4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CNKSR3Q6P9H4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
CNKSR3Q6P9H4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.22■■■□□ 2.59
CNKSR3Q6P9H4 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.19■■■□□ 2.58
CNKSR3Q6P9H4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CNKSR3Q6P9H4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.15■■■□□ 2.58
CNKSR3Q6P9H4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CNKSR3Q6P9H4 AC145285.7-201ENST00000614819 1539 ntBASIC31.11■■■□□ 2.57
CNKSR3Q6P9H4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CNKSR3Q6P9H4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CNKSR3Q6P9H4 CAHM-201ENST00000604200 896 ntBASIC31.07■■■□□ 2.56
CNKSR3Q6P9H4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CNKSR3Q6P9H4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CNKSR3Q6P9H4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CNKSR3Q6P9H4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.99■■■□□ 2.55
CNKSR3Q6P9H4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CNKSR3Q6P9H4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.98■■■□□ 2.55
CNKSR3Q6P9H4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CNKSR3Q6P9H4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CNKSR3Q6P9H4 AL162393.1-201ENST00000437852 946 ntBASIC30.94■■■□□ 2.54
CNKSR3Q6P9H4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.93■■■□□ 2.54
CNKSR3Q6P9H4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CNKSR3Q6P9H4 AL391121.1-201ENST00000607967 1349 ntBASIC30.93■■■□□ 2.54
CNKSR3Q6P9H4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CNKSR3Q6P9H4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
CNKSR3Q6P9H4 AP006261.1-201ENST00000584783 668 ntBASIC30.91■■■□□ 2.54
CNKSR3Q6P9H4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CNKSR3Q6P9H4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CNKSR3Q6P9H4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.9■■■□□ 2.54
CNKSR3Q6P9H4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
CNKSR3Q6P9H4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.87■■■□□ 2.53
CNKSR3Q6P9H4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CNKSR3Q6P9H4 AL133380.1-201ENST00000506013 324 ntBASIC30.86■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms