Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC36.68■■■■□ 3.46
CCDC88AQ3V6T2 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC36.67■■■■□ 3.46
CCDC88AQ3V6T2 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
CCDC88AQ3V6T2 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
CCDC88AQ3V6T2 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.62■■■■□ 3.45
CCDC88AQ3V6T2 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC36.6■■■■□ 3.45
CCDC88AQ3V6T2 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
CCDC88AQ3V6T2 RARRES2P7-201ENST00000567349 469 ntBASIC36.58■■■■□ 3.45
CCDC88AQ3V6T2 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
CCDC88AQ3V6T2 AL031258.1-201ENST00000623562 325 ntBASIC36.52■■■■□ 3.44
CCDC88AQ3V6T2 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC36.51■■■■□ 3.43
CCDC88AQ3V6T2 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC36.48■■■■□ 3.43
CCDC88AQ3V6T2 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
CCDC88AQ3V6T2 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC36.44■■■■□ 3.42
CCDC88AQ3V6T2 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC36.43■■■■□ 3.42
CCDC88AQ3V6T2 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC36.34■■■■□ 3.41
CCDC88AQ3V6T2 AC136428.2-201ENST00000563187 214 ntBASIC36.31■■■■□ 3.4
CCDC88AQ3V6T2 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC36.3■■■■□ 3.4
CCDC88AQ3V6T2 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC36.28■■■■□ 3.4
CCDC88AQ3V6T2 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
CCDC88AQ3V6T2 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC36.22■■■■□ 3.39
CCDC88AQ3V6T2 RPS2P35-201ENST00000443417 897 ntBASIC36.2■■■■□ 3.39
CCDC88AQ3V6T2 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC36.17■■■■□ 3.38
CCDC88AQ3V6T2 SUZ12P1-203ENST00000578195 985 ntBASIC36.17■■■■□ 3.38
CCDC88AQ3V6T2 AC097358.2-201ENST00000607541 1159 ntBASIC36.16■■■■□ 3.38
CCDC88AQ3V6T2 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC36.15■■■■□ 3.38
CCDC88AQ3V6T2 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC36.12■■■■□ 3.37
CCDC88AQ3V6T2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC36.09■■■■□ 3.37
CCDC88AQ3V6T2 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC36.09■■■■□ 3.37
CCDC88AQ3V6T2 SETD8P1-201ENST00000623146 1180 ntBASIC36.06■■■■□ 3.36
CCDC88AQ3V6T2 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC36.05■■■■□ 3.36
CCDC88AQ3V6T2 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC36.04■■■■□ 3.36
CCDC88AQ3V6T2 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.35
CCDC88AQ3V6T2 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC35.99■■■■□ 3.35
CCDC88AQ3V6T2 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC35.97■■■■□ 3.35
CCDC88AQ3V6T2 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
CCDC88AQ3V6T2 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
CCDC88AQ3V6T2 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
CCDC88AQ3V6T2 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC35.92■■■■□ 3.34
CCDC88AQ3V6T2 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
CCDC88AQ3V6T2 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88AQ3V6T2 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.86■■■■□ 3.33
CCDC88AQ3V6T2 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88AQ3V6T2 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.84■■■■□ 3.33
CCDC88AQ3V6T2 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
CCDC88AQ3V6T2 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC35.8■■■■□ 3.32
CCDC88AQ3V6T2 EBPL-203ENST00000378270 579 ntTSL 2 BASIC35.8■■■■□ 3.32
CCDC88AQ3V6T2 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC35.79■■■■□ 3.32
CCDC88AQ3V6T2 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.78■■■■□ 3.32
CCDC88AQ3V6T2 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
CCDC88AQ3V6T2 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.76■■■■□ 3.32
CCDC88AQ3V6T2 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC35.68■■■■□ 3.3
CCDC88AQ3V6T2 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
CCDC88AQ3V6T2 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.66■■■■□ 3.3
CCDC88AQ3V6T2 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.65■■■■□ 3.3
CCDC88AQ3V6T2 AL162393.1-201ENST00000437852 946 ntBASIC35.65■■■■□ 3.3
CCDC88AQ3V6T2 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.65■■■■□ 3.3
CCDC88AQ3V6T2 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC35.63■■■■□ 3.29
CCDC88AQ3V6T2 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.58■■■■□ 3.29
CCDC88AQ3V6T2 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
CCDC88AQ3V6T2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
CCDC88AQ3V6T2 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88AQ3V6T2 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC35.51■■■■□ 3.27
CCDC88AQ3V6T2 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CCDC88AQ3V6T2 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
CCDC88AQ3V6T2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.44■■■■□ 3.26
CCDC88AQ3V6T2 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.43■■■■□ 3.26
CCDC88AQ3V6T2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC35.43■■■■□ 3.26
CCDC88AQ3V6T2 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88AQ3V6T2 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC35.37■■■■□ 3.25
CCDC88AQ3V6T2 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.34■■■■□ 3.25
CCDC88AQ3V6T2 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
CCDC88AQ3V6T2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.32■■■■□ 3.24
CCDC88AQ3V6T2 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.31■■■■□ 3.24
CCDC88AQ3V6T2 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CCDC88AQ3V6T2 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
CCDC88AQ3V6T2 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
CCDC88AQ3V6T2 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.28■■■■□ 3.24
CCDC88AQ3V6T2 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
CCDC88AQ3V6T2 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.27■■■■□ 3.24
CCDC88AQ3V6T2 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.27■■■■□ 3.24
CCDC88AQ3V6T2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.23
CCDC88AQ3V6T2 CAHM-201ENST00000604200 896 ntBASIC35.2■■■■□ 3.23
CCDC88AQ3V6T2 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
CCDC88AQ3V6T2 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
CCDC88AQ3V6T2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
CCDC88AQ3V6T2 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
CCDC88AQ3V6T2 AL391121.1-201ENST00000607967 1349 ntBASIC35.15■■■■□ 3.22
CCDC88AQ3V6T2 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC35.15■■■■□ 3.22
CCDC88AQ3V6T2 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
CCDC88AQ3V6T2 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88AQ3V6T2 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC35.11■■■■□ 3.21
CCDC88AQ3V6T2 AP006261.1-201ENST00000584783 668 ntBASIC35.09■■■■□ 3.21
CCDC88AQ3V6T2 MIR7108-201ENST00000614319 87 ntBASIC35.07■■■■□ 3.21
CCDC88AQ3V6T2 HLA-V-202ENST00000446817 847 ntBASIC35.07■■■■□ 3.2
CCDC88AQ3V6T2 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.07■■■■□ 3.2
CCDC88AQ3V6T2 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
CCDC88AQ3V6T2 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
CCDC88AQ3V6T2 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.04■■■■□ 3.2
CCDC88AQ3V6T2 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC35.04■■■■□ 3.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms