Protein–RNA interactions for Protein: P51800

CLCNKA, Chloride channel protein ClC-Ka, humanhuman

Predictions only

Length 687 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKAP51800 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
CLCNKAP51800 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CLCNKAP51800 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.38■■■□□ 2.13
CLCNKAP51800 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.36■■■□□ 2.13
CLCNKAP51800 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CLCNKAP51800 DYNLL1-208ENST00000550178 581 ntBASIC28.35■■■□□ 2.13
CLCNKAP51800 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.34■■■□□ 2.13
CLCNKAP51800 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
CLCNKAP51800 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
CLCNKAP51800 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CLCNKAP51800 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.32■■■□□ 2.12
CLCNKAP51800 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CLCNKAP51800 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CLCNKAP51800 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.3■■■□□ 2.12
CLCNKAP51800 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CLCNKAP51800 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.27■■■□□ 2.12
CLCNKAP51800 AC145285.7-201ENST00000614819 1539 ntBASIC28.26■■■□□ 2.11
CLCNKAP51800 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC28.25■■■□□ 2.11
CLCNKAP51800 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLCNKAP51800 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLCNKAP51800 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CLCNKAP51800 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
CLCNKAP51800 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CLCNKAP51800 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
CLCNKAP51800 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.18■■■□□ 2.1
CLCNKAP51800 AL031258.1-201ENST00000623562 325 ntBASIC28.18■■■□□ 2.1
CLCNKAP51800 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
CLCNKAP51800 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
CLCNKAP51800 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CLCNKAP51800 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC28.13■■■□□ 2.09
CLCNKAP51800 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CLCNKAP51800 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
CLCNKAP51800 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.1■■■□□ 2.09
CLCNKAP51800 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
CLCNKAP51800 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CLCNKAP51800 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.08■■■□□ 2.09
CLCNKAP51800 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
CLCNKAP51800 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLCNKAP51800 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CLCNKAP51800 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.02■■■□□ 2.08
CLCNKAP51800 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CLCNKAP51800 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
CLCNKAP51800 EBPL-203ENST00000378270 579 ntTSL 2 BASIC27.97■■■□□ 2.07
CLCNKAP51800 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.95■■■□□ 2.07
CLCNKAP51800 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.93■■■□□ 2.06
CLCNKAP51800 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.92■■■□□ 2.06
CLCNKAP51800 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC27.89■■■□□ 2.06
CLCNKAP51800 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.89■■■□□ 2.06
CLCNKAP51800 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC27.89■■■□□ 2.06
CLCNKAP51800 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC27.89■■■□□ 2.06
CLCNKAP51800 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CLCNKAP51800 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CLCNKAP51800 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CLCNKAP51800 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
CLCNKAP51800 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
CLCNKAP51800 MVK-208ENST00000539696 608 ntTSL 5 BASIC27.79■■■□□ 2.04
CLCNKAP51800 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
CLCNKAP51800 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.77■■■□□ 2.04
CLCNKAP51800 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC27.77■■■□□ 2.04
CLCNKAP51800 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
CLCNKAP51800 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
CLCNKAP51800 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
CLCNKAP51800 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
CLCNKAP51800 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CLCNKAP51800 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.68■■■□□ 2.02
CLCNKAP51800 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CLCNKAP51800 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC27.64■■■□□ 2.02
CLCNKAP51800 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CLCNKAP51800 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.62■■■□□ 2.01
CLCNKAP51800 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.62■■■□□ 2.01
CLCNKAP51800 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
CLCNKAP51800 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.59■■■□□ 2.01
CLCNKAP51800 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.59■■■□□ 2.01
CLCNKAP51800 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.58■■■□□ 2.01
CLCNKAP51800 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
CLCNKAP51800 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.53■■■□□ 2
CLCNKAP51800 RARRES2P7-201ENST00000567349 469 ntBASIC27.52■■■□□ 2
CLCNKAP51800 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
CLCNKAP51800 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.51■■□□□ 1.99
CLCNKAP51800 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC27.51■■□□□ 1.99
CLCNKAP51800 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CLCNKAP51800 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.5■■□□□ 1.99
CLCNKAP51800 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CLCNKAP51800 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CLCNKAP51800 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CLCNKAP51800 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CLCNKAP51800 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
CLCNKAP51800 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.45■■□□□ 1.98
CLCNKAP51800 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.45■■□□□ 1.98
CLCNKAP51800 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.44■■□□□ 1.98
CLCNKAP51800 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CLCNKAP51800 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CLCNKAP51800 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CLCNKAP51800 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CLCNKAP51800 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.38■■□□□ 1.97
CLCNKAP51800 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27.37■■□□□ 1.97
CLCNKAP51800 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC27.37■■□□□ 1.97
CLCNKAP51800 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
CLCNKAP51800 SETD8P1-201ENST00000623146 1180 ntBASIC27.35■■□□□ 1.97
CLCNKAP51800 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms