Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC34.16■■■■□ 3.06
HTTP42858 AC136428.2-201ENST00000563187 214 ntBASIC34.14■■■■□ 3.06
HTTP42858 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
HTTP42858 AL031258.1-201ENST00000623562 325 ntBASIC34.13■■■■□ 3.05
HTTP42858 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
HTTP42858 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC34.09■■■■□ 3.05
HTTP42858 RARRES2P7-201ENST00000567349 469 ntBASIC34.07■■■■□ 3.04
HTTP42858 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
HTTP42858 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
HTTP42858 SUZ12P1-203ENST00000578195 985 ntBASIC34.02■■■■□ 3.04
HTTP42858 RPS2P35-201ENST00000443417 897 ntBASIC33.99■■■■□ 3.03
HTTP42858 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
HTTP42858 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC33.99■■■■□ 3.03
HTTP42858 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.97■■■■□ 3.03
HTTP42858 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC33.88■■■■□ 3.01
HTTP42858 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.85■■■■□ 3.01
HTTP42858 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC33.78■■■■□ 3
HTTP42858 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
HTTP42858 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
HTTP42858 AC097358.2-201ENST00000607541 1159 ntBASIC33.74■■■□□ 2.99
HTTP42858 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
HTTP42858 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
HTTP42858 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.66■■■□□ 2.98
HTTP42858 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.65■■■□□ 2.98
HTTP42858 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC33.63■■■□□ 2.97
HTTP42858 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
HTTP42858 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC33.62■■■□□ 2.97
HTTP42858 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.6■■■□□ 2.97
HTTP42858 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC33.59■■■□□ 2.97
HTTP42858 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.58■■■□□ 2.97
HTTP42858 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
HTTP42858 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
HTTP42858 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC33.55■■■□□ 2.96
HTTP42858 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC33.53■■■□□ 2.96
HTTP42858 SETD8P1-201ENST00000623146 1180 ntBASIC33.53■■■□□ 2.96
HTTP42858 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33.52■■■□□ 2.96
HTTP42858 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC33.46■■■□□ 2.95
HTTP42858 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.45■■■□□ 2.95
HTTP42858 AL162393.1-201ENST00000437852 946 ntBASIC33.42■■■□□ 2.94
HTTP42858 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC33.39■■■□□ 2.94
HTTP42858 NRG1-221ENST00000614767 762 ntTSL 5 BASIC33.38■■■□□ 2.93
HTTP42858 EBPL-203ENST00000378270 579 ntTSL 2 BASIC33.37■■■□□ 2.93
HTTP42858 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC33.34■■■□□ 2.93
HTTP42858 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC33.34■■■□□ 2.93
HTTP42858 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC33.33■■■□□ 2.93
HTTP42858 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC33.33■■■□□ 2.93
HTTP42858 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC33.29■■■□□ 2.92
HTTP42858 KLF16-203ENST00000592313 508 ntTSL 3 BASIC33.27■■■□□ 2.92
HTTP42858 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
HTTP42858 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
HTTP42858 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC33.21■■■□□ 2.91
HTTP42858 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
HTTP42858 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC33.19■■■□□ 2.9
HTTP42858 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC33.19■■■□□ 2.9
HTTP42858 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HTTP42858 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HTTP42858 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.12■■■□□ 2.89
HTTP42858 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.11■■■□□ 2.89
HTTP42858 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
HTTP42858 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC33.09■■■□□ 2.89
HTTP42858 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
HTTP42858 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
HTTP42858 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
HTTP42858 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
HTTP42858 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC33■■■□□ 2.87
HTTP42858 CAHM-201ENST00000604200 896 ntBASIC33■■■□□ 2.87
HTTP42858 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
HTTP42858 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
HTTP42858 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
HTTP42858 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
HTTP42858 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
HTTP42858 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.9■■■□□ 2.86
HTTP42858 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
HTTP42858 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
HTTP42858 AP006261.1-201ENST00000584783 668 ntBASIC32.87■■■□□ 2.85
HTTP42858 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
HTTP42858 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
HTTP42858 MIR7108-201ENST00000614319 87 ntBASIC32.82■■■□□ 2.85
HTTP42858 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.82■■■□□ 2.84
HTTP42858 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.82■■■□□ 2.84
HTTP42858 AL391121.1-201ENST00000607967 1349 ntBASIC32.82■■■□□ 2.84
HTTP42858 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
HTTP42858 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
HTTP42858 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
HTTP42858 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
HTTP42858 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
HTTP42858 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.74■■■□□ 2.83
HTTP42858 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
HTTP42858 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
HTTP42858 ABHD17AP4-201ENST00000411545 909 ntBASIC32.73■■■□□ 2.83
HTTP42858 HLA-V-202ENST00000446817 847 ntBASIC32.71■■■□□ 2.83
HTTP42858 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.69■■■□□ 2.82
HTTP42858 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.69■■■□□ 2.82
HTTP42858 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
HTTP42858 AC145285.7-201ENST00000614819 1539 ntBASIC32.65■■■□□ 2.82
HTTP42858 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.63■■■□□ 2.81
HTTP42858 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.62■■■□□ 2.81
HTTP42858 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
HTTP42858 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
HTTP42858 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms