Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.72■■■□□ 2.83
MSH4O15457 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
MSH4O15457 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
MSH4O15457 AC145285.7-201ENST00000614819 1539 ntBASIC32.71■■■□□ 2.83
MSH4O15457 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.69■■■□□ 2.82
MSH4O15457 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.67■■■□□ 2.82
MSH4O15457 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.67■■■□□ 2.82
MSH4O15457 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.64■■■□□ 2.82
MSH4O15457 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
MSH4O15457 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.62■■■□□ 2.81
MSH4O15457 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
MSH4O15457 DYNLL1-208ENST00000550178 581 ntBASIC32.62■■■□□ 2.81
MSH4O15457 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
MSH4O15457 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.59■■■□□ 2.81
MSH4O15457 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.58■■■□□ 2.81
MSH4O15457 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.56■■■□□ 2.8
MSH4O15457 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.54■■■□□ 2.8
MSH4O15457 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
MSH4O15457 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.51■■■□□ 2.79
MSH4O15457 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.5■■■□□ 2.79
MSH4O15457 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.49■■■□□ 2.79
MSH4O15457 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
MSH4O15457 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
MSH4O15457 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.47■■■□□ 2.79
MSH4O15457 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
MSH4O15457 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH4O15457 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.46■■■□□ 2.79
MSH4O15457 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.45■■■□□ 2.79
MSH4O15457 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
MSH4O15457 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.42■■■□□ 2.78
MSH4O15457 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.4■■■□□ 2.78
MSH4O15457 AL031258.1-201ENST00000623562 325 ntBASIC32.4■■■□□ 2.78
MSH4O15457 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.39■■■□□ 2.78
MSH4O15457 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
MSH4O15457 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.37■■■□□ 2.77
MSH4O15457 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.36■■■□□ 2.77
MSH4O15457 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
MSH4O15457 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH4O15457 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
MSH4O15457 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
MSH4O15457 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH4O15457 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH4O15457 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
MSH4O15457 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
MSH4O15457 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH4O15457 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
MSH4O15457 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.16■■■□□ 2.74
MSH4O15457 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
MSH4O15457 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
MSH4O15457 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
MSH4O15457 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.06■■■□□ 2.72
MSH4O15457 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.03■■■□□ 2.72
MSH4O15457 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.03■■■□□ 2.72
MSH4O15457 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
MSH4O15457 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32■■■□□ 2.71
MSH4O15457 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32■■■□□ 2.71
MSH4O15457 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH4O15457 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
MSH4O15457 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
MSH4O15457 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.97■■■□□ 2.71
MSH4O15457 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.96■■■□□ 2.71
MSH4O15457 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.96■■■□□ 2.71
MSH4O15457 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
MSH4O15457 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
MSH4O15457 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH4O15457 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH4O15457 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH4O15457 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.91■■■□□ 2.7
MSH4O15457 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.91■■■□□ 2.7
MSH4O15457 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
MSH4O15457 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH4O15457 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
MSH4O15457 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.81■■■□□ 2.68
MSH4O15457 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MSH4O15457 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
MSH4O15457 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.79■■■□□ 2.68
MSH4O15457 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
MSH4O15457 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH4O15457 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.75■■■□□ 2.67
MSH4O15457 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.74■■■□□ 2.67
MSH4O15457 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
MSH4O15457 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.72■■■□□ 2.67
MSH4O15457 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.72■■■□□ 2.67
MSH4O15457 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.7■■■□□ 2.67
MSH4O15457 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.68■■■□□ 2.66
MSH4O15457 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
MSH4O15457 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
MSH4O15457 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH4O15457 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH4O15457 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
MSH4O15457 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
MSH4O15457 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
MSH4O15457 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.6■■■□□ 2.65
MSH4O15457 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH4O15457 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.59■■■□□ 2.65
MSH4O15457 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.58■■■□□ 2.65
MSH4O15457 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH4O15457 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH4O15457 RARRES2P7-201ENST00000567349 469 ntBASIC31.55■■■□□ 2.64
MSH4O15457 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms