Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
TRAV20A0A0B4J274 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
TRAV20A0A0B4J274 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
TRAV20A0A0B4J274 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC24.25■■□□□ 1.47
TRAV20A0A0B4J274 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
TRAV20A0A0B4J274 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
TRAV20A0A0B4J274 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
TRAV20A0A0B4J274 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV20A0A0B4J274 DYNLL1-208ENST00000550178 581 ntBASIC24.2■■□□□ 1.46
TRAV20A0A0B4J274 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRAV20A0A0B4J274 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.18■■□□□ 1.46
TRAV20A0A0B4J274 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
TRAV20A0A0B4J274 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRAV20A0A0B4J274 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRAV20A0A0B4J274 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRAV20A0A0B4J274 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRAV20A0A0B4J274 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.08■■□□□ 1.45
TRAV20A0A0B4J274 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.07■■□□□ 1.44
TRAV20A0A0B4J274 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAV20A0A0B4J274 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAV20A0A0B4J274 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.05■■□□□ 1.44
TRAV20A0A0B4J274 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRAV20A0A0B4J274 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRAV20A0A0B4J274 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRAV20A0A0B4J274 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRAV20A0A0B4J274 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
TRAV20A0A0B4J274 AL031258.1-201ENST00000623562 325 ntBASIC24■■□□□ 1.43
TRAV20A0A0B4J274 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TRAV20A0A0B4J274 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TRAV20A0A0B4J274 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC23.93■■□□□ 1.42
TRAV20A0A0B4J274 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRAV20A0A0B4J274 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRAV20A0A0B4J274 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
TRAV20A0A0B4J274 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC23.88■■□□□ 1.41
TRAV20A0A0B4J274 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC23.88■■□□□ 1.41
TRAV20A0A0B4J274 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TRAV20A0A0B4J274 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
TRAV20A0A0B4J274 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRAV20A0A0B4J274 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.84■■□□□ 1.41
TRAV20A0A0B4J274 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRAV20A0A0B4J274 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRAV20A0A0B4J274 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.81■■□□□ 1.4
TRAV20A0A0B4J274 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TRAV20A0A0B4J274 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
TRAV20A0A0B4J274 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRAV20A0A0B4J274 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRAV20A0A0B4J274 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC23.75■■□□□ 1.39
TRAV20A0A0B4J274 AL161658.1-201ENST00000623641 1967 ntBASIC23.75■■□□□ 1.39
TRAV20A0A0B4J274 EBPL-203ENST00000378270 579 ntTSL 2 BASIC23.75■■□□□ 1.39
TRAV20A0A0B4J274 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC23.73■■□□□ 1.39
TRAV20A0A0B4J274 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRAV20A0A0B4J274 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.7■■□□□ 1.38
TRAV20A0A0B4J274 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRAV20A0A0B4J274 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.69■■□□□ 1.38
TRAV20A0A0B4J274 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRAV20A0A0B4J274 RARRES2P7-201ENST00000567349 469 ntBASIC23.68■■□□□ 1.38
TRAV20A0A0B4J274 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRAV20A0A0B4J274 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRAV20A0A0B4J274 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRAV20A0A0B4J274 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
TRAV20A0A0B4J274 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.64■■□□□ 1.37
TRAV20A0A0B4J274 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
TRAV20A0A0B4J274 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRAV20A0A0B4J274 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.62■■□□□ 1.37
TRAV20A0A0B4J274 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRAV20A0A0B4J274 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.6■■□□□ 1.37
TRAV20A0A0B4J274 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRAV20A0A0B4J274 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.59■■□□□ 1.37
TRAV20A0A0B4J274 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.59■■□□□ 1.37
TRAV20A0A0B4J274 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
TRAV20A0A0B4J274 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
TRAV20A0A0B4J274 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
TRAV20A0A0B4J274 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.56■■□□□ 1.36
TRAV20A0A0B4J274 AC139426.1-201ENST00000568218 2529 ntBASIC23.55■■□□□ 1.36
TRAV20A0A0B4J274 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRAV20A0A0B4J274 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.55■■□□□ 1.36
TRAV20A0A0B4J274 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.54■■□□□ 1.36
TRAV20A0A0B4J274 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
TRAV20A0A0B4J274 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
TRAV20A0A0B4J274 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC23.53■■□□□ 1.36
TRAV20A0A0B4J274 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC23.53■■□□□ 1.36
TRAV20A0A0B4J274 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
TRAV20A0A0B4J274 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.51■■□□□ 1.35
TRAV20A0A0B4J274 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.51■■□□□ 1.35
TRAV20A0A0B4J274 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.51■■□□□ 1.35
TRAV20A0A0B4J274 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.5■■□□□ 1.35
TRAV20A0A0B4J274 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.47■■□□□ 1.35
TRAV20A0A0B4J274 AC145285.7-201ENST00000614819 1539 ntBASIC23.47■■□□□ 1.35
TRAV20A0A0B4J274 AC097358.2-201ENST00000607541 1159 ntBASIC23.45■■□□□ 1.34
TRAV20A0A0B4J274 SETD8P1-201ENST00000623146 1180 ntBASIC23.45■■□□□ 1.34
TRAV20A0A0B4J274 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.45■■□□□ 1.34
TRAV20A0A0B4J274 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC23.44■■□□□ 1.34
TRAV20A0A0B4J274 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
TRAV20A0A0B4J274 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TRAV20A0A0B4J274 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.41■■□□□ 1.34
TRAV20A0A0B4J274 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.41■■□□□ 1.34
TRAV20A0A0B4J274 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TRAV20A0A0B4J274 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TRAV20A0A0B4J274 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.37■■□□□ 1.33
TRAV20A0A0B4J274 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms