Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TACC1-216ENST00000521642 493 ntTSL 1 (best)17.79■□□□□ 0.441e-8■■■■■ 103.4
SF3B1O75533 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-8■■■■■ 103.4
SF3B1O75533 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.441e-8■■■■■ 103.4
SF3B1O75533 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.76■□□□□ 0.436e-6■■■■■ 103.4
SF3B1O75533 FAM126B-208ENST00000485636 530 ntTSL 417.72■□□□□ 0.436e-6■■■■■ 103.4
SF3B1O75533 PHYKPL-212ENST00000504096 607 ntTSL 317.7■□□□□ 0.421e-8■■■■■ 103.4
SF3B1O75533 RNF40-205ENST00000563909 711 ntTSL 317.7■□□□□ 0.421e-8■■■■■ 103.4
SF3B1O75533 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.68■□□□□ 0.421e-8■■■■■ 103.4
SF3B1O75533 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.67■□□□□ 0.426e-6■■■■■ 103.4
SF3B1O75533 RMDN3-207ENST00000558777 2139 ntTSL 217.66■□□□□ 0.421e-8■■■■■ 103.4
SF3B1O75533 POLR2E-201ENST00000215587 1286 ntTSL 317.66■□□□□ 0.423e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-218ENST00000502382 530 ntTSL 417.65■□□□□ 0.424e-6■■■■■ 103.4
SF3B1O75533 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.422e-12■■■■■ 103.4
SF3B1O75533 SLBP-204ENST00000483348 1030 ntTSL 317.63■□□□□ 0.411e-6■■■■■ 103.4
SF3B1O75533 ITPA-209ENST00000490838 977 ntTSL 217.63■□□□□ 0.416e-6■■■■■ 103.4
SF3B1O75533 CD151-219ENST00000531999 580 ntTSL 317.63■□□□□ 0.411e-8■■■■■ 103.4
SF3B1O75533 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.61■□□□□ 0.416e-6■■■■■ 103.4
SF3B1O75533 ANKRD11-205ENST00000562194 618 ntTSL 317.61■□□□□ 0.416e-6■■■■■ 103.4
SF3B1O75533 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.6■□□□□ 0.411e-8■■■■■ 103.4
SF3B1O75533 KLC2-209ENST00000461611 643 ntTSL 317.59■□□□□ 0.411e-8■■■■■ 103.4
SF3B1O75533 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.411e-8■■■■■ 103.4
SF3B1O75533 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.46e-6■■■■■ 103.4
SF3B1O75533 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.53■□□□□ 0.46e-6■■■■■ 103.4
SF3B1O75533 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.52■□□□□ 0.46e-6■■■■■ 103.4
SF3B1O75533 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.52■□□□□ 0.46e-6■■■■■ 103.4
SF3B1O75533 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.51■□□□□ 0.393e-6■■■■■ 103.4
SF3B1O75533 MPDU1-216ENST00000577088 1645 ntTSL 217.49■□□□□ 0.391e-8■■■■■ 103.4
SF3B1O75533 ANXA7-205ENST00000492380 843 ntTSL 517.47■□□□□ 0.392e-6■■■■■ 103.4
SF3B1O75533 TSSC2-202ENST00000526284 1244 ntTSL 1 (best)17.47■□□□□ 0.392e-12■■■■■ 103.4
SF3B1O75533 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.396e-6■■■■■ 103.4
SF3B1O75533 STRN4-207ENST00000594357 850 ntTSL 517.46■□□□□ 0.386e-6■■■■■ 103.4
SF3B1O75533 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.46■□□□□ 0.386e-6■■■■■ 103.4
SF3B1O75533 STRN4-221ENST00000601631 1125 ntTSL 217.46■□□□□ 0.386e-6■■■■■ 103.4
SF3B1O75533 CBX6-203ENST00000469420 2213 ntTSL 217.45■□□□□ 0.381e-8■■■■■ 103.4
SF3B1O75533 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.44■□□□□ 0.381e-8■■■■■ 103.4
SF3B1O75533 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.386e-6■■■■■ 103.4
SF3B1O75533 CORO7-217ENST00000572666 1237 ntTSL 517.43■□□□□ 0.381e-8■■■■■ 103.4
SF3B1O75533 DDX51-203ENST00000462829 2203 ntTSL 217.4■□□□□ 0.386e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.39■□□□□ 0.376e-6■■■■■ 103.4
SF3B1O75533 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.371e-8■■■■■ 103.4
SF3B1O75533 PPOX-213ENST00000497522 816 ntTSL 417.39■□□□□ 0.372e-12■■■■■ 103.4
SF3B1O75533 GANAB-214ENST00000534613 737 ntTSL 517.37■□□□□ 0.371e-8■■■■■ 103.4
SF3B1O75533 UBE2J2-215ENST00000477894 767 ntTSL 517.37■□□□□ 0.374e-6■■■■■ 103.4
SF3B1O75533 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.35■□□□□ 0.376e-6■■■■■ 103.4
SF3B1O75533 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.34■□□□□ 0.372e-7■■■■■ 103.4
SF3B1O75533 ASCC3-205ENST00000468245 1227 ntTSL 217.32■□□□□ 0.366e-6■■■■■ 103.4
SF3B1O75533 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.3■□□□□ 0.366e-6■■■■■ 103.4
SF3B1O75533 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.366e-6■■■■■ 103.4
SF3B1O75533 GRINA-206ENST00000530898 558 ntTSL 217.25■□□□□ 0.356e-6■■■■■ 103.4
SF3B1O75533 PPOX-210ENST00000490768 1056 ntTSL 317.24■□□□□ 0.352e-12■■■■■ 103.4
SF3B1O75533 RRP1-205ENST00000483896 805 ntTSL 317.23■□□□□ 0.356e-6■■■■■ 103.4
SF3B1O75533 S100PBP-212ENST00000529027 429 ntTSL 317.21■□□□□ 0.356e-6■■■■■ 103.4
SF3B1O75533 ASCC3-202ENST00000324723 852 ntTSL 317.18■□□□□ 0.346e-6■■■■■ 103.4
SF3B1O75533 TNRC6B-204ENST00000441751 415 ntTSL 517.18■□□□□ 0.341e-8■■■■■ 103.4
SF3B1O75533 GORASP1-212ENST00000452389 2933 ntTSL 1 (best)17.17■□□□□ 0.346e-6■■■■■ 103.4
SF3B1O75533 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.336e-6■■■■■ 103.4
SF3B1O75533 PIGG-218ENST00000510235 752 ntTSL 317.14■□□□□ 0.331e-8■■■■■ 103.4
SF3B1O75533 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.11■□□□□ 0.332e-6■■■■■ 103.4
SF3B1O75533 EHMT1-208ENST00000475564 2782 ntTSL 1 (best)17.09■□□□□ 0.336e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.326e-6■■■■■ 103.4
SF3B1O75533 KLC2-213ENST00000531240 559 ntTSL 417.06■□□□□ 0.321e-8■■■■■ 103.4
SF3B1O75533 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.06■□□□□ 0.322e-6■■■■■ 103.4
SF3B1O75533 MAN1B1-204ENST00000475449 905 ntTSL 317.05■□□□□ 0.326e-6■■■■■ 103.4
SF3B1O75533 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.02■□□□□ 0.326e-6■■■■■ 103.4
SF3B1O75533 NAA60-215ENST00000572739 803 ntTSL 417.01■□□□□ 0.316e-6■■■■■ 103.4
SF3B1O75533 U2AF1-211ENST00000486519 682 ntTSL 317■□□□□ 0.316e-6■■■■■ 103.4
SF3B1O75533 SUGP1-208ENST00000588580 715 ntTSL 216.99■□□□□ 0.311e-8■■■■■ 103.4
SF3B1O75533 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.99■□□□□ 0.311e-8■■■■■ 103.4
SF3B1O75533 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.97■□□□□ 0.316e-6■■■■■ 103.4
SF3B1O75533 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.316e-6■■■■■ 103.4
SF3B1O75533 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.96■□□□□ 0.316e-6■■■■■ 103.4
SF3B1O75533 KLC2-208ENST00000440228 620 ntTSL 416.94■□□□□ 0.31e-8■■■■■ 103.4
SF3B1O75533 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.91■□□□□ 0.36e-6■■■■■ 103.4
SF3B1O75533 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.88■□□□□ 0.296e-6■■■■■ 103.4
SF3B1O75533 REXO5-210ENST00000566276 924 ntTSL 516.85■□□□□ 0.291e-8■■■■■ 103.4
SF3B1O75533 FAT1-208ENST00000509647 1852 ntTSL 1 (best)16.84■□□□□ 0.296e-6■■■■■ 103.4
SF3B1O75533 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.81■□□□□ 0.281e-8■■■■■ 103.4
SF3B1O75533 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.77■□□□□ 0.286e-6■■■■■ 103.4
SF3B1O75533 FBXL2-206ENST00000435207 1584 ntTSL 216.77■□□□□ 0.286e-6■■■■■ 103.4
SF3B1O75533 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.77■□□□□ 0.271e-8■■■■■ 103.4
SF3B1O75533 POLR2E-206ENST00000589737 1105 ntTSL 216.72■□□□□ 0.273e-6■■■■■ 103.4
SF3B1O75533 HERC3-206ENST00000431413 761 ntTSL 516.71■□□□□ 0.271e-8■■■■■ 103.4
SF3B1O75533 STRN4-211ENST00000595357 1602 ntTSL 216.71■□□□□ 0.276e-6■■■■■ 103.4
SF3B1O75533 PIGG-206ENST00000503261 626 ntTSL 516.7■□□□□ 0.261e-8■■■■■ 103.4
SF3B1O75533 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.67■□□□□ 0.266e-6■■■■■ 103.4
SF3B1O75533 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.67■□□□□ 0.266e-6■■■■■ 103.4
SF3B1O75533 FAM76B-202ENST00000398187 3823 ntTSL 1 (best)16.61■□□□□ 0.251e-8■■■■■ 103.4
SF3B1O75533 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.256e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.58■□□□□ 0.252e-12■■■■■ 103.4
SF3B1O75533 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.246e-6■■■■■ 103.4
SF3B1O75533 PLEKHH1-214ENST00000561135 591 ntTSL 416.53■□□□□ 0.241e-8■■■■■ 103.4
SF3B1O75533 TRIQK-203ENST00000517751 805 ntTSL 316.53■□□□□ 0.246e-6■■■■■ 103.4
SF3B1O75533 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.243e-6■■■■■ 103.4
SF3B1O75533 AC145423.3-201ENST00000615987 467 ntBASIC16.51■□□□□ 0.236e-6■■■■■ 103.4
SF3B1O75533 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.42■□□□□ 0.223e-6■■■■■ 103.4
SF3B1O75533 CD151-208ENST00000525868 541 ntTSL 416.38■□□□□ 0.211e-8■■■■■ 103.4
SF3B1O75533 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.38■□□□□ 0.216e-6■■■■■ 103.4
SF3B1O75533 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.211e-8■■■■■ 103.4
SF3B1O75533 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.22e-6■■■■■ 103.4
SF3B1O75533 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.32■□□□□ 0.22e-7■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1528.5 ms