Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.71□□□□□ -0.21
COL12A1Q99715 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
COL12A1Q99715 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 AL133267.1-201ENST00000398220 340 ntBASIC13.71□□□□□ -0.21
COL12A1Q99715 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.71□□□□□ -0.21
COL12A1Q99715 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.71□□□□□ -0.21
COL12A1Q99715 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.71□□□□□ -0.21
COL12A1Q99715 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 AC007663.3-201ENST00000609632 465 ntBASIC13.71□□□□□ -0.21
COL12A1Q99715 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.71□□□□□ -0.21
COL12A1Q99715 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL12A1Q99715 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
COL12A1Q99715 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL12A1Q99715 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL12A1Q99715 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.71□□□□□ -0.22
COL12A1Q99715 AC138894.2-201ENST00000602838 371 ntBASIC13.71□□□□□ -0.22
COL12A1Q99715 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC13.71□□□□□ -0.22
COL12A1Q99715 REXO1L1P-202ENST00000608646 1974 ntBASIC13.71□□□□□ -0.22
COL12A1Q99715 AL354989.2-201ENST00000435838 1540 ntBASIC13.71□□□□□ -0.22
COL12A1Q99715 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.71□□□□□ -0.22
COL12A1Q99715 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL12A1Q99715 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL12A1Q99715 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL12A1Q99715 AC078991.1-201ENST00000437297 610 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 IGHV3-37-201ENST00000518544 340 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 AL161670.2-201ENST00000557650 1227 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL12A1Q99715 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 KRT8P35-201ENST00000483942 1338 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL12A1Q99715 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 HLA-A-202ENST00000376806 1854 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.7□□□□□ -0.22
COL12A1Q99715 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 AC087045.2-201ENST00000606279 1003 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 AC091544.8-201ENST00000619490 361 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.7□□□□□ -0.22
COL12A1Q99715 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.7□□□□□ -0.22
COL12A1Q99715 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 AL662844.4-201ENST00000606367 2838 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.7□□□□□ -0.22
COL12A1Q99715 AC007787.1-201ENST00000588095 1583 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.7□□□□□ -0.22
COL12A1Q99715 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
COL12A1Q99715 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.7□□□□□ -0.22
COL12A1Q99715 PIN4P1-201ENST00000451079 396 ntBASIC13.7□□□□□ -0.22
COL12A1Q99715 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL12A1Q99715 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL12A1Q99715 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC13.69□□□□□ -0.22
COL12A1Q99715 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 AC074338.1-201ENST00000416825 156 ntBASIC13.69□□□□□ -0.22
COL12A1Q99715 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.69□□□□□ -0.22
COL12A1Q99715 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL12A1Q99715 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL12A1Q99715 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.69□□□□□ -0.22
COL12A1Q99715 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms