Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.79■□□□□ 0.6
NEDD4P46934 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.79■□□□□ 0.6
NEDD4P46934 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NEDD4P46934 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NEDD4P46934 AP005117.1-202ENST00000581724 1908 ntBASIC18.79■□□□□ 0.6
NEDD4P46934 AL607033.1-201ENST00000623900 1599 ntBASIC18.79■□□□□ 0.6
NEDD4P46934 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEDD4P46934 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.78■□□□□ 0.6
NEDD4P46934 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.78■□□□□ 0.6
NEDD4P46934 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.78■□□□□ 0.6
NEDD4P46934 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NEDD4P46934 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 AL512638.1-201ENST00000457493 794 ntBASIC18.78■□□□□ 0.6
NEDD4P46934 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 RNA5SP421-201ENST00000516864 134 ntBASIC18.78■□□□□ 0.6
NEDD4P46934 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.78■□□□□ 0.6
NEDD4P46934 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.78■□□□□ 0.6
NEDD4P46934 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.78■□□□□ 0.6
NEDD4P46934 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 PRAL-201ENST00000624952 3286 ntBASIC18.78■□□□□ 0.6
NEDD4P46934 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.78■□□□□ 0.6
NEDD4P46934 Z97205.2-201ENST00000564697 1639 ntBASIC18.78■□□□□ 0.6
NEDD4P46934 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NEDD4P46934 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.78■□□□□ 0.6
NEDD4P46934 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NEDD4P46934 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NEDD4P46934 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.77■□□□□ 0.6
NEDD4P46934 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.77■□□□□ 0.6
NEDD4P46934 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.77■□□□□ 0.6
NEDD4P46934 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.77■□□□□ 0.6
NEDD4P46934 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.77■□□□□ 0.6
NEDD4P46934 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.77■□□□□ 0.6
NEDD4P46934 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NEDD4P46934 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEDD4P46934 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEDD4P46934 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEDD4P46934 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
NEDD4P46934 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.77■□□□□ 0.6
NEDD4P46934 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEDD4P46934 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NEDD4P46934 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NEDD4P46934 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
NEDD4P46934 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.77■□□□□ 0.59
NEDD4P46934 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.76■□□□□ 0.59
NEDD4P46934 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.76■□□□□ 0.59
NEDD4P46934 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 KRT18P64-201ENST00000434946 1219 ntBASIC18.76■□□□□ 0.59
NEDD4P46934 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.76■□□□□ 0.59
NEDD4P46934 AL589987.1-201ENST00000453380 819 ntBASIC18.76■□□□□ 0.59
NEDD4P46934 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 AC104794.3-201ENST00000566840 1248 ntBASIC18.76■□□□□ 0.59
NEDD4P46934 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 AC004461.2-201ENST00000629517 803 ntBASIC18.76■□□□□ 0.59
NEDD4P46934 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.76■□□□□ 0.59
NEDD4P46934 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
NEDD4P46934 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NEDD4P46934 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms