Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 KRT18P28-201ENST00000453838 1332 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 KRT8P37-201ENST00000451609 1420 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 CNN2P2-201ENST00000443536 909 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 CNN2P3-201ENST00000450201 906 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 AL136317.3-201ENST00000618497 906 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 AL035456.1-201ENST00000456064 1369 ntBASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC4Q9NTJ3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 EEF1DP4-201ENST00000446006 880 ntBASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 AC025678.2-201ENST00000562061 970 ntBASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC4Q9NTJ3 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.53■□□□□ 0.88
SMC4Q9NTJ3 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms