Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 AC003669.1-201ENST00000334569 611 ntBASIC14.26□□□□□ -0.13
MMP28Q9H239 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.26□□□□□ -0.13
MMP28Q9H239 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.26□□□□□ -0.13
MMP28Q9H239 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 STK25P1-201ENST00000585406 838 ntBASIC14.26□□□□□ -0.13
MMP28Q9H239 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.26□□□□□ -0.13
MMP28Q9H239 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
MMP28Q9H239 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
MMP28Q9H239 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.26□□□□□ -0.13
MMP28Q9H239 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
MMP28Q9H239 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.25□□□□□ -0.13
MMP28Q9H239 KLF4P1-201ENST00000412782 1185 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 STK19B-204ENST00000512515 211 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.25□□□□□ -0.13
MMP28Q9H239 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 AL031008.1-201ENST00000619963 541 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 AC073592.5-201ENST00000624854 528 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.25□□□□□ -0.13
MMP28Q9H239 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 AL390755.1-201ENST00000623716 2027 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
MMP28Q9H239 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MMP28Q9H239 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 MYO15B-237ENST00000642007 4893 ntBASIC14.25□□□□□ -0.13
MMP28Q9H239 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MMP28Q9H239 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MMP28Q9H239 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms