Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 AC026316.1-201ENST00000398900 414 ntBASIC15.54■□□□□ 0.08
VPS13AQ96RL7 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 NPM1P43-201ENST00000558669 786 ntBASIC15.54■□□□□ 0.08
VPS13AQ96RL7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 AC022748.3-201ENST00000621828 275 ntBASIC15.54■□□□□ 0.08
VPS13AQ96RL7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC012618.1-201ENST00000461223 412 ntBASIC15.53■□□□□ 0.08
VPS13AQ96RL7 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC107373.2-201ENST00000607735 490 ntBASIC15.53■□□□□ 0.08
VPS13AQ96RL7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS13AQ96RL7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AC132192.2-201ENST00000596206 1147 ntBASIC15.52■□□□□ 0.08
VPS13AQ96RL7 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VPS13AQ96RL7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 AL354989.2-201ENST00000435838 1540 ntBASIC15.52■□□□□ 0.07
VPS13AQ96RL7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms