Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC9.66□□□□□ -0.86
HSPG2P98160 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC9.66□□□□□ -0.86
HSPG2P98160 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
HSPG2P98160 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
HSPG2P98160 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC9.66□□□□□ -0.86
HSPG2P98160 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC9.66□□□□□ -0.86
HSPG2P98160 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC9.66□□□□□ -0.86
HSPG2P98160 AC002472.4-201ENST00000641915 272 ntBASIC9.66□□□□□ -0.86
HSPG2P98160 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC9.66□□□□□ -0.86
HSPG2P98160 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC9.66□□□□□ -0.86
HSPG2P98160 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC9.66□□□□□ -0.86
HSPG2P98160 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC9.66□□□□□ -0.86
HSPG2P98160 AC025262.2-201ENST00000623975 1056 ntBASIC9.66□□□□□ -0.86
HSPG2P98160 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
HSPG2P98160 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 AC245100.5-201ENST00000452108 331 ntBASIC9.65□□□□□ -0.86
HSPG2P98160 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC9.65□□□□□ -0.86
HSPG2P98160 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC9.65□□□□□ -0.86
HSPG2P98160 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC9.65□□□□□ -0.86
HSPG2P98160 NAT9-211ENST00000580632 799 ntTSL 3 BASIC9.65□□□□□ -0.86
HSPG2P98160 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
HSPG2P98160 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
HSPG2P98160 RN7SKP214-201ENST00000364208 315 ntBASIC9.65□□□□□ -0.86
HSPG2P98160 AL512430.1-201ENST00000392575 860 ntBASIC9.65□□□□□ -0.86
HSPG2P98160 RPS9P1-201ENST00000419943 583 ntBASIC9.65□□□□□ -0.86
HSPG2P98160 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC9.65□□□□□ -0.86
HSPG2P98160 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC9.65□□□□□ -0.86
HSPG2P98160 AC006158.1-201ENST00000610661 249 ntBASIC9.65□□□□□ -0.86
HSPG2P98160 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC9.65□□□□□ -0.86
HSPG2P98160 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
HSPG2P98160 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC9.65□□□□□ -0.86
HSPG2P98160 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC9.65□□□□□ -0.87
HSPG2P98160 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 NEFHP1-201ENST00000412845 2629 ntBASIC9.65□□□□□ -0.87
HSPG2P98160 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 SOD2-202ENST00000367054 815 ntTSL 2 BASIC9.65□□□□□ -0.87
HSPG2P98160 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC9.65□□□□□ -0.87
HSPG2P98160 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC9.65□□□□□ -0.87
HSPG2P98160 EID1-202ENST00000560490 584 ntTSL 3 BASIC9.65□□□□□ -0.87
HSPG2P98160 SNORD3B-2-202ENST00000571722 791 ntBASIC9.65□□□□□ -0.87
HSPG2P98160 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC9.65□□□□□ -0.87
HSPG2P98160 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC9.65□□□□□ -0.87
HSPG2P98160 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
HSPG2P98160 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC9.64□□□□□ -0.87
HSPG2P98160 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
HSPG2P98160 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC9.64□□□□□ -0.87
HSPG2P98160 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
HSPG2P98160 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
HSPG2P98160 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
HSPG2P98160 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
HSPG2P98160 AC004522.1-201ENST00000419978 654 ntBASIC9.64□□□□□ -0.87
HSPG2P98160 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC9.64□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms