Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.23■□□□□ 0.67
COL4A1P02462 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.23■□□□□ 0.67
COL4A1P02462 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A1P02462 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A1P02462 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A1P02462 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
COL4A1P02462 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A1P02462 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A1P02462 AC009486.1-201ENST00000569860 813 ntBASIC19.22■□□□□ 0.67
COL4A1P02462 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A1P02462 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
COL4A1P02462 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 AC148477.4-201ENST00000613430 1793 ntBASIC19.22■□□□□ 0.67
COL4A1P02462 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A1P02462 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A1P02462 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL4A1P02462 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A1P02462 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL4A1P02462 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A1P02462 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
COL4A1P02462 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A1P02462 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A1P02462 AL133338.1-201ENST00000565695 1517 ntBASIC19.21■□□□□ 0.67
COL4A1P02462 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A1P02462 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 MIR326-201ENST00000362220 95 ntBASIC19.21■□□□□ 0.67
COL4A1P02462 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
COL4A1P02462 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.21■□□□□ 0.67
COL4A1P02462 AC093813.1-201ENST00000605066 256 ntBASIC19.21■□□□□ 0.67
COL4A1P02462 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL4A1P02462 LINC02199-201ENST00000506655 2702 ntBASIC19.21■□□□□ 0.67
COL4A1P02462 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A1P02462 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A1P02462 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A1P02462 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A1P02462 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A1P02462 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 ECM1P1-201ENST00000604092 1279 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.2■□□□□ 0.66
COL4A1P02462 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A1P02462 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.2■□□□□ 0.66
COL4A1P02462 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL4A1P02462 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 BRWD1P1-201ENST00000401091 371 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 GOLGA2P4-201ENST00000441462 777 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A1P02462 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A1P02462 AC010328.2-201ENST00000597698 1111 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 AC145423.3-201ENST00000615987 467 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 AC138951.2-201ENST00000623455 1161 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A1P02462 AC008687.7-202ENST00000637404 953 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 AC024909.3-201ENST00000611513 2257 ntBASIC19.2■□□□□ 0.66
COL4A1P02462 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A1P02462 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms