Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 AC046158.3-201ENST00000624947 2558 ntBASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 AC139530.3-201ENST00000620344 690 ntBASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE3Q6ZMZ3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 AC026979.3-201ENST00000607315 403 ntBASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE3Q6ZMZ3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 PAUPAR-201ENST00000630360 2965 ntBASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms