Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AL591424.1-201ENST00000442569 1213 ntBASIC16.32■□□□□ 0.2
RPA3P35244 FAM185BP-201ENST00000443595 716 ntBASIC16.32■□□□□ 0.2
RPA3P35244 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.32■□□□□ 0.2
RPA3P35244 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 RNA5SP416-201ENST00000516838 111 ntBASIC16.32■□□□□ 0.2
RPA3P35244 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.32■□□□□ 0.2
RPA3P35244 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
RPA3P35244 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.32■□□□□ 0.2
RPA3P35244 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
RPA3P35244 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 NORAD-201ENST00000565493 5339 ntBASIC16.32■□□□□ 0.2
RPA3P35244 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
RPA3P35244 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.32■□□□□ 0.2
RPA3P35244 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPA3P35244 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 FAM45BP-202ENST00000592932 1624 ntBASIC16.31■□□□□ 0.2
RPA3P35244 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
RPA3P35244 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RPA3P35244 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 MIR940-201ENST00000401276 94 ntBASIC16.31■□□□□ 0.2
RPA3P35244 IGLL3P-201ENST00000412472 434 ntBASIC16.31■□□□□ 0.2
RPA3P35244 AL513480.1-201ENST00000451731 511 ntBASIC16.31■□□□□ 0.2
RPA3P35244 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 AC140113.2-201ENST00000604370 208 ntBASIC16.31■□□□□ 0.2
RPA3P35244 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
RPA3P35244 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RPA3P35244 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 AL009178.2-201ENST00000597278 2719 ntBASIC16.31■□□□□ 0.2
RPA3P35244 CICP24-201ENST00000605464 2705 ntBASIC16.31■□□□□ 0.2
RPA3P35244 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPA3P35244 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RPA3P35244 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.3■□□□□ 0.2
RPA3P35244 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.3■□□□□ 0.2
RPA3P35244 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.3■□□□□ 0.2
RPA3P35244 ACTL9-202ENST00000612068 1252 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms