Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 AC138969.3-201ENST00000546612 1459 ntBASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 AC138932.2-201ENST00000548268 1459 ntBASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 AC126755.4-201ENST00000549796 1459 ntBASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSX2IPQ9Y2D8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 MEP1AP4-201ENST00000423244 1087 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 AL139010.1-201ENST00000454878 894 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 DOC2GP-202ENST00000514950 1163 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 SDHAP3-202ENST00000515467 728 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 AC010336.2-201ENST00000564226 506 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 MIR6069-201ENST00000620069 79 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 AL033527.5-202ENST00000641632 1098 ntBASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX2IPQ9Y2D8 AC106886.4-201ENST00000623557 2502 ntBASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 HLA-J-202ENST00000469281 1241 ntBASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 AC011495.1-201ENST00000498085 584 ntBASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX2IPQ9Y2D8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX2IPQ9Y2D8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms