Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 RN7SKP214-201ENST00000364208 315 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 AL357563.1-201ENST00000404728 395 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 AC005618.3-201ENST00000624928 458 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 AC242376.2-201ENST00000619355 883 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC11.32□□□□□ -0.6
PRKDCP78527 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 RNU1-114P-201ENST00000365297 166 ntBASIC11.31□□□□□ -0.6
PRKDCP78527 SOD2-202ENST00000367054 815 ntTSL 2 BASIC11.31□□□□□ -0.6
PRKDCP78527 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC11.31□□□□□ -0.6
PRKDCP78527 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
PRKDCP78527 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
PRKDCP78527 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 OS9-205ENST00000413095 1660 ntTSL 2 BASIC11.31□□□□□ -0.6
PRKDCP78527 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 GHSR-202ENST00000427970 912 ntBASIC11.31□□□□□ -0.6
PRKDCP78527 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC11.31□□□□□ -0.6
PRKDCP78527 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
PRKDCP78527 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC11.31□□□□□ -0.6
PRKDCP78527 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC11.31□□□□□ -0.6
PRKDCP78527 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PRKDCP78527 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC11.31□□□□□ -0.6
PRKDCP78527 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC11.31□□□□□ -0.6
PRKDCP78527 DDX5-235ENST00000630471 473 ntTSL 4 BASIC11.31□□□□□ -0.6
PRKDCP78527 AC002472.4-201ENST00000641915 272 ntBASIC11.31□□□□□ -0.6
PRKDCP78527 PP12613-201ENST00000424958 2230 ntBASIC11.31□□□□□ -0.6
PRKDCP78527 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.31□□□□□ -0.6
PRKDCP78527 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 AC100850.1-201ENST00000506768 649 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
PRKDCP78527 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 KLF2P2-201ENST00000416807 1039 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 KRT18P25-201ENST00000508931 1278 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 AL031713.1-201ENST00000564813 661 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 ZACNP1-201ENST00000612259 710 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 CROCCP2-202ENST00000412962 2773 ntBASIC11.3□□□□□ -0.6
PRKDCP78527 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC11.3□□□□□ -0.6
PRKDCP78527 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC11.3□□□□□ -0.6
PRKDCP78527 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms