Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.24□□□□□ -0.29
CDX1P47902 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CDX1P47902 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 YBX2P1-201ENST00000394192 760 ntBASIC13.24□□□□□ -0.29
CDX1P47902 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
CDX1P47902 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.24□□□□□ -0.29
CDX1P47902 IGLL3P-201ENST00000412472 434 ntBASIC13.24□□□□□ -0.29
CDX1P47902 AC023274.1-201ENST00000418278 595 ntBASIC13.24□□□□□ -0.29
CDX1P47902 UPF3AP3-201ENST00000420996 769 ntBASIC13.24□□□□□ -0.29
CDX1P47902 MCCD1P2-201ENST00000423228 335 ntBASIC13.24□□□□□ -0.29
CDX1P47902 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.24□□□□□ -0.29
CDX1P47902 RHOQP3-201ENST00000437982 621 ntBASIC13.24□□□□□ -0.29
CDX1P47902 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.24□□□□□ -0.29
CDX1P47902 AC087163.2-201ENST00000457299 853 ntBASIC13.24□□□□□ -0.29
CDX1P47902 CXCL1P1-201ENST00000502804 216 ntBASIC13.24□□□□□ -0.29
CDX1P47902 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.24□□□□□ -0.29
CDX1P47902 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
CDX1P47902 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.24□□□□□ -0.29
CDX1P47902 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.24□□□□□ -0.29
CDX1P47902 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CDX1P47902 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 AC079781.5-202ENST00000641784 3743 ntBASIC13.24□□□□□ -0.29
CDX1P47902 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.24□□□□□ -0.29
CDX1P47902 AC023157.3-201ENST00000619086 2088 ntBASIC13.24□□□□□ -0.29
CDX1P47902 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CDX1P47902 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
CDX1P47902 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.23□□□□□ -0.29
CDX1P47902 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.23□□□□□ -0.29
CDX1P47902 MIR1233-2-201ENST00000408138 82 ntBASIC13.23□□□□□ -0.29
CDX1P47902 MIR1233-1-201ENST00000408722 82 ntBASIC13.23□□□□□ -0.29
CDX1P47902 FAM185BP-201ENST00000443595 716 ntBASIC13.23□□□□□ -0.29
CDX1P47902 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.23□□□□□ -0.29
CDX1P47902 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 AC023141.13-201ENST00000604991 943 ntBASIC13.23□□□□□ -0.29
CDX1P47902 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.23□□□□□ -0.29
CDX1P47902 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.23□□□□□ -0.29
CDX1P47902 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms