Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A2P12110 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A2P12110 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A2P12110 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.94■□□□□ 0.14
COL6A2P12110 Z83851.2-201ENST00000609564 659 ntBASIC15.94■□□□□ 0.14
COL6A2P12110 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.94■□□□□ 0.14
COL6A2P12110 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A2P12110 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A2P12110 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 AC099063.4-201ENST00000641099 1602 ntBASIC15.94■□□□□ 0.14
COL6A2P12110 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A2P12110 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A2P12110 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A2P12110 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A2P12110 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.93■□□□□ 0.14
COL6A2P12110 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 AL662844.1-201ENST00000546340 181 ntBASIC15.93■□□□□ 0.14
COL6A2P12110 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 AC004877.2-201ENST00000623941 599 ntBASIC15.93■□□□□ 0.14
COL6A2P12110 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
COL6A2P12110 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
COL6A2P12110 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL6A2P12110 AC105250.1-201ENST00000509378 2057 ntBASIC15.93■□□□□ 0.14
COL6A2P12110 BCAR1-209ENST00000546196 1340 ntBASIC15.93■□□□□ 0.14
COL6A2P12110 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A2P12110 CICP13-201ENST00000422015 2789 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 AL109954.1-202ENST00000564051 2148 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
COL6A2P12110 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL6A2P12110 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL6A2P12110 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A2P12110 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A2P12110 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A2P12110 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A2P12110 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL6A2P12110 KRT19P2-202ENST00000557173 1012 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.92■□□□□ 0.14
COL6A2P12110 AC024267.1-201ENST00000582320 895 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 AC073389.1-201ENST00000595595 795 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 AC134407.2-201ENST00000625089 1978 ntBASIC15.92■□□□□ 0.14
COL6A2P12110 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL6A2P12110 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A2P12110 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms