Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA2O43364 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HOXA2O43364 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA2O43364 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 AC090142.2-201ENST00000483263 416 ntBASIC17.1■□□□□ 0.33
HOXA2O43364 AC119751.2-201ENST00000504529 210 ntBASIC17.1■□□□□ 0.33
HOXA2O43364 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
HOXA2O43364 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HOXA2O43364 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXA2O43364 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
HOXA2O43364 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HOXA2O43364 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA2O43364 REXO1L1P-202ENST00000608646 1974 ntBASIC17.09■□□□□ 0.33
HOXA2O43364 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA2O43364 CROCCP4-201ENST00000457096 498 ntBASIC17.09■□□□□ 0.33
HOXA2O43364 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA2O43364 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA2O43364 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA2O43364 AC009486.1-201ENST00000569860 813 ntBASIC17.09■□□□□ 0.33
HOXA2O43364 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
HOXA2O43364 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HOXA2O43364 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HOXA2O43364 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 AC106820.2-201ENST00000563775 3264 ntBASIC17.09■□□□□ 0.33
HOXA2O43364 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA2O43364 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA2O43364 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXA2O43364 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.08■□□□□ 0.33
HOXA2O43364 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.08■□□□□ 0.33
HOXA2O43364 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
HOXA2O43364 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXA2O43364 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 KLF2P4-201ENST00000451959 1225 ntBASIC17.08■□□□□ 0.32
HOXA2O43364 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXA2O43364 SNX29P1-201ENST00000548357 1007 ntBASIC17.08■□□□□ 0.32
HOXA2O43364 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXA2O43364 RN7SL371P-201ENST00000578099 267 ntBASIC17.08■□□□□ 0.32
HOXA2O43364 MIR4259-201ENST00000584466 101 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms