Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 SPDYE22P-201ENST00000582158 798 ntBASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AC027307.3-201ENST00000594262 1100 ntBASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AL662799.1-202ENST00000614205 422 ntBASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 AC025048.6-201ENST00000634326 1161 ntBASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 PKD1P1-201ENST00000458669 6805 ntBASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 HLA-H-201ENST00000383620 1096 ntBASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 HLA-V-204ENST00000476601 1289 ntBASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC144BQ3MJ40 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 AL603832.2-201ENST00000566195 2125 ntBASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 AL358472.5-202ENST00000641448 1267 ntBASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CCDC144BQ3MJ40 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms