Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXC12P31275 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HOXC12P31275 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 AL365209.1-201ENST00000624418 6473 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXC12P31275 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXC12P31275 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 POU5F1P6-201ENST00000466990 990 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 AC098859.1-201ENST00000502915 1238 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 ALG1L8P-201ENST00000533887 760 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.36□□□□□ -0.11
HOXC12P31275 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 AC026150.2-201ENST00000564693 1156 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 AC024267.1-201ENST00000582320 895 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.36□□□□□ -0.11
HOXC12P31275 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXC12P31275 MIR6752-201ENST00000618442 71 ntBASIC14.36□□□□□ -0.11
HOXC12P31275 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXC12P31275 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXC12P31275 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXC12P31275 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXC12P31275 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
HOXC12P31275 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HOXC12P31275 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 AC142381.1-201ENST00000426099 345 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 AL353705.2-201ENST00000428243 662 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 AC097493.3-201ENST00000509725 367 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXC12P31275 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXC12P31275 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.35□□□□□ -0.11
HOXC12P31275 LINC01225-203ENST00000563550 1244 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 AL138918.1-201ENST00000568306 659 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXC12P31275 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 AC084121.4-201ENST00000641598 221 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 AF228730.8-201ENST00000642140 221 ntBASIC14.35□□□□□ -0.11
HOXC12P31275 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.35□□□□□ -0.11
HOXC12P31275 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXC12P31275 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXC12P31275 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXC12P31275 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXC12P31275 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXC12P31275 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXC12P31275 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXC12P31275 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXC12P31275 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms