Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGB1P09429 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 FAM58DP-201ENST00000428076 619 ntBASIC19.01■□□□□ 0.63
HMGB1P09429 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGB1P09429 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGB1P09429 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 AC093520.2-201ENST00000561830 333 ntBASIC19.01■□□□□ 0.63
HMGB1P09429 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGB1P09429 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HMGB1P09429 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19■□□□□ 0.63
HMGB1P09429 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 AL136982.4-201ENST00000437689 1740 ntBASIC19■□□□□ 0.63
HMGB1P09429 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19■□□□□ 0.63
HMGB1P09429 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGB1P09429 AC254562.1-201ENST00000417586 456 ntBASIC19■□□□□ 0.63
HMGB1P09429 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19■□□□□ 0.63
HMGB1P09429 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19■□□□□ 0.63
HMGB1P09429 AC092865.5-201ENST00000545435 363 ntBASIC19■□□□□ 0.63
HMGB1P09429 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
HMGB1P09429 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19■□□□□ 0.63
HMGB1P09429 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19■□□□□ 0.63
HMGB1P09429 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19■□□□□ 0.63
HMGB1P09429 PAUPAR-201ENST00000630360 2965 ntBASIC19■□□□□ 0.63
HMGB1P09429 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HMGB1P09429 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB1P09429 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HMGB1P09429 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 AL353705.2-201ENST00000428243 662 ntBASIC18.99■□□□□ 0.63
HMGB1P09429 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.99■□□□□ 0.63
HMGB1P09429 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
HMGB1P09429 AC018529.1-201ENST00000613063 361 ntBASIC18.99■□□□□ 0.63
HMGB1P09429 AC009093.7-201ENST00000623853 1223 ntBASIC18.99■□□□□ 0.63
HMGB1P09429 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HMGB1P09429 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGB1P09429 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
HMGB1P09429 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB1P09429 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 CYP4F24P-201ENST00000586049 1580 ntBASIC18.98■□□□□ 0.63
HMGB1P09429 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB1P09429 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HMGB1P09429 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB1P09429 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms