Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CPNE1Q99829 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CPNE1Q99829 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.17■□□□□ 0.18
CPNE1Q99829 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.17■□□□□ 0.18
CPNE1Q99829 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE1Q99829 DBET-201ENST00000630918 3363 ntBASIC16.17■□□□□ 0.18
CPNE1Q99829 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.16■□□□□ 0.18
CPNE1Q99829 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CPNE1Q99829 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 AC092850.2-201ENST00000623821 2697 ntBASIC16.16■□□□□ 0.18
CPNE1Q99829 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 AC136621.1-201ENST00000624017 2304 ntBASIC16.16■□□□□ 0.18
CPNE1Q99829 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.16■□□□□ 0.18
CPNE1Q99829 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.16■□□□□ 0.18
CPNE1Q99829 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 KRT19P2-202ENST00000557173 1012 ntBASIC16.16■□□□□ 0.18
CPNE1Q99829 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.16■□□□□ 0.18
CPNE1Q99829 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.16■□□□□ 0.18
CPNE1Q99829 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE1Q99829 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE1Q99829 PKD1P5-201ENST00000532415 10291 ntBASIC16.16■□□□□ 0.18
CPNE1Q99829 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE1Q99829 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CPNE1Q99829 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 GPX1P2-201ENST00000429271 606 ntBASIC16.15■□□□□ 0.18
CPNE1Q99829 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
CPNE1Q99829 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.15■□□□□ 0.18
CPNE1Q99829 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CPNE1Q99829 SLC25A6P4-201ENST00000586535 553 ntBASIC16.15■□□□□ 0.18
CPNE1Q99829 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE1Q99829 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 AC063926.3-201ENST00000624734 5658 ntBASIC16.15■□□□□ 0.18
CPNE1Q99829 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE1Q99829 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CPNE1Q99829 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE1Q99829 CICP13-201ENST00000422015 2789 ntBASIC16.15■□□□□ 0.18
CPNE1Q99829 AC006058.4-201ENST00000624016 1670 ntBASIC16.14■□□□□ 0.18
CPNE1Q99829 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CPNE1Q99829 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CPNE1Q99829 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.14■□□□□ 0.17
CPNE1Q99829 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CPNE1Q99829 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE1Q99829 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms