Protein–RNA interactions for Protein: Q8NET4

RTL9, Retrotransposon Gag-like protein 9, humanhuman

Predictions only

Length 1,388 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL9Q8NET4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.73■□□□□ 0.75
RTL9Q8NET4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.73■□□□□ 0.75
RTL9Q8NET4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.73■□□□□ 0.75
RTL9Q8NET4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
RTL9Q8NET4 AL033527.4-201ENST00000641026 673 ntBASIC19.73■□□□□ 0.75
RTL9Q8NET4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
RTL9Q8NET4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTL9Q8NET4 CDC14C-201ENST00000428251 1719 ntBASIC19.73■□□□□ 0.75
RTL9Q8NET4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 AL442647.2-201ENST00000429864 857 ntBASIC19.72■□□□□ 0.75
RTL9Q8NET4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 PHKG1P2-201ENST00000457537 863 ntBASIC19.72■□□□□ 0.75
RTL9Q8NET4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 CLK3P2-201ENST00000427566 1453 ntBASIC19.72■□□□□ 0.75
RTL9Q8NET4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.72■□□□□ 0.75
RTL9Q8NET4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTL9Q8NET4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 SLED1-202ENST00000512051 380 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 BRI3BPP1-201ENST00000594224 787 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 AC097359.3-201ENST00000603982 1210 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 PRORSD1P-202ENST00000563365 2154 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 REXO1L1P-202ENST00000608646 1974 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 AC134407.2-201ENST00000625089 1978 ntBASIC19.71■□□□□ 0.75
RTL9Q8NET4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RTL9Q8NET4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.71■□□□□ 0.75
RTL9Q8NET4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RTL9Q8NET4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RTL9Q8NET4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RTL9Q8NET4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.7■□□□□ 0.74
RTL9Q8NET4 AC007389.4-201ENST00000454674 793 ntBASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms