Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 AL592309.1-201ENST00000443127 649 ntBASIC15.3■□□□□ 0.04
RAE1P78406 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.3■□□□□ 0.04
RAE1P78406 IGHV3-62-201ENST00000520057 340 ntBASIC15.3■□□□□ 0.04
RAE1P78406 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.3■□□□□ 0.04
RAE1P78406 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.3■□□□□ 0.04
RAE1P78406 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.3■□□□□ 0.04
RAE1P78406 SLC25A39P2-201ENST00000537614 270 ntBASIC15.3■□□□□ 0.04
RAE1P78406 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 AC243562.2-201ENST00000561247 970 ntBASIC15.3■□□□□ 0.04
RAE1P78406 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.3■□□□□ 0.04
RAE1P78406 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.3■□□□□ 0.04
RAE1P78406 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.3■□□□□ 0.04
RAE1P78406 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.3■□□□□ 0.04
RAE1P78406 AC020658.6-201ENST00000623564 1870 ntBASIC15.3■□□□□ 0.04
RAE1P78406 AC022532.1-201ENST00000624563 1728 ntBASIC15.3■□□□□ 0.04
RAE1P78406 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RAE1P78406 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RAE1P78406 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.29■□□□□ 0.04
RAE1P78406 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 AP3S2-216ENST00000617003 1561 ntBASIC15.29■□□□□ 0.04
RAE1P78406 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 UXT-AS1-201ENST00000590504 1525 ntBASIC15.29■□□□□ 0.04
RAE1P78406 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.29■□□□□ 0.04
RAE1P78406 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.29■□□□□ 0.04
RAE1P78406 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
RAE1P78406 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.29■□□□□ 0.04
RAE1P78406 HLA-H-201ENST00000383620 1096 ntBASIC15.29■□□□□ 0.04
RAE1P78406 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.29■□□□□ 0.04
RAE1P78406 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
RAE1P78406 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 AC022145.2-201ENST00000598203 171 ntBASIC15.29■□□□□ 0.04
RAE1P78406 AC105339.1-204ENST00000636249 355 ntBASIC15.29■□□□□ 0.04
RAE1P78406 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.29■□□□□ 0.04
RAE1P78406 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.29■□□□□ 0.04
RAE1P78406 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RAE1P78406 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 HYMAI-201ENST00000635591 3347 ntBASIC15.28■□□□□ 0.04
RAE1P78406 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.28■□□□□ 0.04
RAE1P78406 AC136621.1-201ENST00000624017 2304 ntBASIC15.28■□□□□ 0.04
RAE1P78406 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 SSR4P1-203ENST00000599569 2260 ntBASIC15.28■□□□□ 0.04
RAE1P78406 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.28■□□□□ 0.04
RAE1P78406 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RAE1P78406 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.28■□□□□ 0.04
RAE1P78406 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.28■□□□□ 0.04
RAE1P78406 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.28■□□□□ 0.04
RAE1P78406 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.28■□□□□ 0.04
RAE1P78406 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.28■□□□□ 0.04
RAE1P78406 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.28■□□□□ 0.04
RAE1P78406 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.28■□□□□ 0.04
RAE1P78406 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.28■□□□□ 0.04
RAE1P78406 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.28■□□□□ 0.04
RAE1P78406 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms