Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.49■□□□□ 0.07
PDLIM1O00151 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 AL031008.1-201ENST00000619963 541 ntBASIC15.49■□□□□ 0.07
PDLIM1O00151 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PDLIM1O00151 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 ACTG1P4-201ENST00000425123 1122 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 AC079781.3-201ENST00000449110 356 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 FGFR3P6-201ENST00000457012 610 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC008608.2-201ENST00000606089 416 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC069224.1-201ENST00000566372 1715 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PDLIM1O00151 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 LINC01101-201ENST00000622953 1884 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PDLIM1O00151 AC016027.1-202ENST00000607927 1699 ntBASIC15.48■□□□□ 0.07
PDLIM1O00151 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
PDLIM1O00151 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PDLIM1O00151 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PDLIM1O00151 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PDLIM1O00151 AC148477.5-201ENST00000625164 1645 ntBASIC15.47■□□□□ 0.07
PDLIM1O00151 AC106881.1-201ENST00000605849 3329 ntBASIC15.47■□□□□ 0.07
PDLIM1O00151 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
PDLIM1O00151 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PDLIM1O00151 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.47■□□□□ 0.07
PDLIM1O00151 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.47■□□□□ 0.07
PDLIM1O00151 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.47■□□□□ 0.07
PDLIM1O00151 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.47■□□□□ 0.07
PDLIM1O00151 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PDLIM1O00151 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms