Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 MIR648-201ENST00000385046 94 ntBASIC17.32■□□□□ 0.36
CNTN3Q9P232 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 SPDYE18-201ENST00000510091 1050 ntBASIC17.32■□□□□ 0.36
CNTN3Q9P232 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 AC104794.3-201ENST00000566840 1248 ntBASIC17.32■□□□□ 0.36
CNTN3Q9P232 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 AL109936.8-201ENST00000641772 604 ntBASIC17.32■□□□□ 0.36
CNTN3Q9P232 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CNTN3Q9P232 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTN3Q9P232 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AC026691.1-201ENST00000602502 2017 ntBASIC17.31■□□□□ 0.36
CNTN3Q9P232 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AC004790.1-201ENST00000612686 536 ntBASIC17.31■□□□□ 0.36
CNTN3Q9P232 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.31■□□□□ 0.36
CNTN3Q9P232 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AC006449.5-201ENST00000610658 2098 ntBASIC17.31■□□□□ 0.36
CNTN3Q9P232 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
CNTN3Q9P232 AC092364.2-201ENST00000596710 2692 ntBASIC17.31■□□□□ 0.36
CNTN3Q9P232 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTN3Q9P232 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC134407.2-201ENST00000625089 1978 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms