Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.15■□□□□ 0.18
HMGB4Q8WW32 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 RARRES2P5-201ENST00000564013 466 ntBASIC16.15■□□□□ 0.18
HMGB4Q8WW32 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB4Q8WW32 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.14■□□□□ 0.18
HMGB4Q8WW32 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HMGB4Q8WW32 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.14■□□□□ 0.18
HMGB4Q8WW32 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 UBALD1-205ENST00000590891 2641 ntBASIC16.14■□□□□ 0.17
HMGB4Q8WW32 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 AC008735.3-201ENST00000596646 500 ntBASIC16.14■□□□□ 0.17
HMGB4Q8WW32 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB4Q8WW32 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PRORSD1P-202ENST00000563365 2154 ntBASIC16.13■□□□□ 0.17
HMGB4Q8WW32 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 AC105020.1-201ENST00000435356 2205 ntBASIC16.13■□□□□ 0.17
HMGB4Q8WW32 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms