Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 FLJ38576-201ENST00000623820 2459 ntBASIC15.05■□□□□ -0
BEST3Q8N1M1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.05■□□□□ -0
BEST3Q8N1M1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 RNF216P1-203ENST00000404404 2427 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 CETN4P-206ENST00000642099 2168 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 PCGF3-213ENST00000620529 1899 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 AL589702.1-201ENST00000641229 1509 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.04■□□□□ -0
BEST3Q8N1M1 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 TSSK5P-201ENST00000423978 907 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.04■□□□□ -0
BEST3Q8N1M1 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.04■□□□□ -0
BEST3Q8N1M1 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.04■□□□□ -0
BEST3Q8N1M1 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.04■□□□□ -0
BEST3Q8N1M1 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 BANF1P1-201ENST00000553684 263 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.04■□□□□ -0
BEST3Q8N1M1 LINC02560-201ENST00000596379 459 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 AL589739.1-201ENST00000607720 493 ntBASIC15.04■□□□□ -0
BEST3Q8N1M1 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.04■□□□□ -0
BEST3Q8N1M1 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.04■□□□□ -0
BEST3Q8N1M1 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
BEST3Q8N1M1 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.04■□□□□ -0
BEST3Q8N1M1 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.03■□□□□ -0
BEST3Q8N1M1 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BEST3Q8N1M1 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
BEST3Q8N1M1 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
BEST3Q8N1M1 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.03■□□□□ -0
BEST3Q8N1M1 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.03■□□□□ -0
BEST3Q8N1M1 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms