Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.63■□□□□ 0.25
HMGA1P17096 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 AC092552.1-201ENST00000547243 906 ntBASIC16.63■□□□□ 0.25
HMGA1P17096 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 AL450472.2-201ENST00000603663 1156 ntBASIC16.63■□□□□ 0.25
HMGA1P17096 AC097359.3-201ENST00000603982 1210 ntBASIC16.63■□□□□ 0.25
HMGA1P17096 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGA1P17096 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGA1P17096 AC092364.2-201ENST00000596710 2692 ntBASIC16.63■□□□□ 0.25
HMGA1P17096 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 CLK3P2-201ENST00000427566 1453 ntBASIC16.62■□□□□ 0.25
HMGA1P17096 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
HMGA1P17096 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.62■□□□□ 0.25
HMGA1P17096 TOMM22P5-201ENST00000416399 439 ntBASIC16.62■□□□□ 0.25
HMGA1P17096 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGA1P17096 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGA1P17096 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGA1P17096 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGA1P17096 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGA1P17096 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGA1P17096 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGA1P17096 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGA1P17096 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 MIR648-201ENST00000385046 94 ntBASIC16.61■□□□□ 0.25
HMGA1P17096 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGA1P17096 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
HMGA1P17096 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
HMGA1P17096 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms