Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPS3A-205ENST00000507327 674 ntTSL 26.08□□□□□ -1.446e-12■□□□□ 10.9
YBX3P16989 RPS3A-213ENST00000515792 671 ntTSL 35.86□□□□□ -1.476e-12■□□□□ 10.9
YBX3P16989 IGFBP3-208ENST00000460477 574 ntTSL 223.57■■□□□ 1.362e-9■□□□□ 10.9
YBX3P16989 IGFBP3-206ENST00000448817 571 ntTSL 417.41■□□□□ 0.382e-9■□□□□ 10.9
YBX3P16989 CCDC91-219ENST00000544780 693 ntTSL 328.11■■■□□ 2.097e-8■□□□□ 10.9
YBX3P16989 CCDC91-218ENST00000544649 665 ntTSL 325.79■■□□□ 1.727e-8■□□□□ 10.9
YBX3P16989 CCDC91-205ENST00000536442 1301 ntTSL 525.09■■□□□ 1.617e-8■□□□□ 10.9
YBX3P16989 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.32■□□□□ 0.847e-8■□□□□ 10.9
YBX3P16989 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.67e-8■□□□□ 10.9
YBX3P16989 CCDC91-206ENST00000538586 471 ntTSL 49.7□□□□□ -0.867e-8■□□□□ 10.9
YBX3P16989 CCDC91-216ENST00000543534 575 ntTSL 58.39□□□□□ -1.077e-8■□□□□ 10.9
YBX3P16989 CCDC91-203ENST00000535520 1626 ntTSL 27.74□□□□□ -1.177e-8■□□□□ 10.9
YBX3P16989 CCDC91-204ENST00000536154 549 ntTSL 46.8□□□□□ -1.327e-8■□□□□ 10.9
YBX3P16989 CCDC91-211ENST00000540794 518 ntTSL 34.52□□□□□ -1.697e-8■□□□□ 10.9
YBX3P16989 RPL4-207ENST00000564647 1110 ntTSL 28.33□□□□□ -1.088e-55■□□□□ 10.9
YBX3P16989 TXNRD1-215ENST00000526950 1847 ntTSL 5 BASIC12.67□□□□□ -0.384e-8■□□□□ 10.9
YBX3P16989 ERF-203ENST00000593944 555 ntTSL 425.12■■□□□ 1.619e-8■□□□□ 10.9
YBX3P16989 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.399e-8■□□□□ 10.9
YBX3P16989 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.28■■□□□ 1.329e-8■□□□□ 10.9
YBX3P16989 ERF-207ENST00000598965 264 ntTSL 318.85■□□□□ 0.619e-8■□□□□ 10.9
YBX3P16989 MFSD12-208ENST00000588918 2040 ntTSL 530.33■■■□□ 2.453e-7■□□□□ 10.9
YBX3P16989 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.433e-7■□□□□ 10.9
YBX3P16989 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.133e-7■□□□□ 10.9
YBX3P16989 MFSD12-207ENST00000588626 525 ntTSL 323.09■■□□□ 1.293e-7■□□□□ 10.9
YBX3P16989 MFSD12-212ENST00000591878 557 ntTSL 521.7■■□□□ 1.063e-7■□□□□ 10.9
YBX3P16989 MFSD12-205ENST00000585814 1002 ntTSL 320.25■□□□□ 0.833e-7■□□□□ 10.9
YBX3P16989 MFSD12-213ENST00000592652 486 ntTSL 518.54■□□□□ 0.563e-7■□□□□ 10.9
YBX3P16989 ACTR3-204ENST00000446821 818 ntTSL 321.02■□□□□ 0.961e-8■□□□□ 10.9
YBX3P16989 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.32■□□□□ 0.681e-8■□□□□ 10.9
YBX3P16989 ACTR3-202ENST00000415792 676 ntTSL 3 BASIC14.92□□□□□ -0.021e-8■□□□□ 10.9
YBX3P16989 ACTR3-206ENST00000484165 676 ntTSL 27.92□□□□□ -1.141e-8■□□□□ 10.9
YBX3P16989 SNRPD1-204ENST00000582475 723 ntTSL 3 BASIC15.18■□□□□ 0.022e-14■□□□□ 10.9
YBX3P16989 SNRPD1-203ENST00000579618 320 ntTSL 5 BASIC14.44□□□□□ -0.12e-14■□□□□ 10.9
YBX3P16989 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -12e-14■□□□□ 10.9
YBX3P16989 UBC-213ENST00000546120 718 ntTSL 5 BASIC10.53□□□□□ -0.721e-13■□□□□ 10.9
YBX3P16989 RFK-202ENST00000472900 753 ntTSL 323.52■■□□□ 1.367e-7■□□□□ 10.9
YBX3P16989 RFK-205ENST00000483155 962 ntTSL 218.69■□□□□ 0.587e-7■□□□□ 10.9
YBX3P16989 RFK-203ENST00000476087 554 ntTSL 46.63□□□□□ -1.357e-7■□□□□ 10.9
YBX3P16989 ASNS-216ENST00000487714 689 ntTSL 26.98□□□□□ -1.299e-15■□□□□ 10.9
YBX3P16989 PLOD1-209ENST00000491536 639 ntTSL 312.85□□□□□ -0.356e-7■□□□□ 10.9
YBX3P16989 PLOD1-207ENST00000481933 2339 ntTSL 211.06□□□□□ -0.646e-7■□□□□ 10.9
YBX3P16989 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.08■■□□□ 1.771e-6■□□□□ 10.9
YBX3P16989 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC21.03■□□□□ 0.964e-7■□□□□ 10.9
YBX3P16989 GNB2-210ENST00000451587 887 ntTSL 519.36■□□□□ 0.694e-8■□□□□ 10.9
YBX3P16989 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.929e-8■□□□□ 10.9
YBX3P16989 SLC38A2-208ENST00000549258 4384 ntTSL 24.36□□□□□ -1.719e-8■□□□□ 10.9
YBX3P16989 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC7.23□□□□□ -1.256e-7■□□□□ 10.9
YBX3P16989 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7□□□□□ -1.296e-7■□□□□ 10.9
YBX3P16989 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.336e-7■□□□□ 10.9
YBX3P16989 NCOR1-208ENST00000436068 274 ntTSL 1 (best)3.53□□□□□ -1.846e-7■□□□□ 10.9
YBX3P16989 NMT1-211ENST00000591931 748 ntTSL 223.03■■□□□ 1.281e-7■□□□□ 10.9
YBX3P16989 HBM-202ENST00000472539 592 ntTSL 526.77■■□□□ 1.886e-29■□□□□ 10.9
YBX3P16989 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.135e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-207ENST00000574213 634 ntTSL 311.09□□□□□ -0.635e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-208ENST00000574468 1021 ntTSL 210.34□□□□□ -0.755e-7■□□□□ 10.8
YBX3P16989 AHSA1-212ENST00000556963 787 ntTSL 29.69□□□□□ -0.865e-10■□□□□ 10.8
YBX3P16989 PAFAH1B1-209ENST00000574816 662 ntTSL 58.3□□□□□ -1.085e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-205ENST00000571495 1503 ntTSL 27.78□□□□□ -1.165e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-201ENST00000397193 1277 ntTSL 26.85□□□□□ -1.315e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-206ENST00000572915 1361 ntTSL 1 (best)6.8□□□□□ -1.325e-7■□□□□ 10.8
YBX3P16989 PAFAH1B1-213ENST00000610190 650 ntTSL 25.93□□□□□ -1.465e-7■□□□□ 10.8
YBX3P16989 EIF4A1-202ENST00000396527 1169 ntTSL 29.23□□□□□ -0.931e-10■□□□□ 10.8
YBX3P16989 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.353e-10■□□□□ 10.8
YBX3P16989 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.056e-7■□□□□ 10.8
YBX3P16989 ATP1A1-205ENST00000440951 579 ntTSL 510.71□□□□□ -0.692e-9■□□□□ 10.8
YBX3P16989 TCP1-208ENST00000537390 691 ntTSL 524.19■■□□□ 1.465e-12■□□□□ 10.8
YBX3P16989 CARHSP1-215ENST00000570125 681 ntTSL 437.14■■■■□ 3.541e-7■□□□□ 10.8
YBX3P16989 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC24.34■■□□□ 1.491e-7■□□□□ 10.8
YBX3P16989 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.371e-7■□□□□ 10.8
YBX3P16989 CARHSP1-206ENST00000563815 1913 ntTSL 221.86■■□□□ 1.091e-7■□□□□ 10.8
YBX3P16989 CARHSP1-212ENST00000568968 461 ntTSL 220.07■□□□□ 0.81e-7■□□□□ 10.8
YBX3P16989 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.741e-7■□□□□ 10.8
YBX3P16989 CARHSP1-211ENST00000568117 521 ntTSL 319.16■□□□□ 0.661e-7■□□□□ 10.8
YBX3P16989 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.661e-7■□□□□ 10.8
YBX3P16989 CARHSP1-210ENST00000567908 565 ntTSL 218.63■□□□□ 0.571e-7■□□□□ 10.8
YBX3P16989 CARHSP1-207ENST00000565287 556 ntTSL 318.39■□□□□ 0.531e-7■□□□□ 10.8
YBX3P16989 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.361e-7■□□□□ 10.8
YBX3P16989 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.141e-7■□□□□ 10.8
YBX3P16989 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.151e-7■□□□□ 10.8
YBX3P16989 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.241e-7■□□□□ 10.8
YBX3P16989 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.281e-7■□□□□ 10.8
YBX3P16989 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.321e-7■□□□□ 10.8
YBX3P16989 RBM17-204ENST00000437845 833 ntTSL 324.68■■□□□ 1.541e-10■□□□□ 10.8
YBX3P16989 RPL27-203ENST00000587478 584 ntTSL 226.86■■□□□ 1.891e-46■□□□□ 10.8
YBX3P16989 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.698e-9■□□□□ 10.8
YBX3P16989 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC18.09■□□□□ 0.498e-9■□□□□ 10.8
YBX3P16989 ATP5H-203ENST00000538432 533 ntTSL 38.02□□□□□ -1.138e-9■□□□□ 10.8
YBX3P16989 PRKCB-206ENST00000482000 541 ntTSL 36.69□□□□□ -1.343e-11■□□□□ 10.8
YBX3P16989 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.971e-29■□□□□ 10.8
YBX3P16989 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.391e-29■□□□□ 10.8
YBX3P16989 ACTG1-205ENST00000572105 1168 ntTSL 517.88■□□□□ 0.451e-29■□□□□ 10.8
YBX3P16989 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.451e-29■□□□□ 10.8
YBX3P16989 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.091e-29■□□□□ 10.8
YBX3P16989 ACTG1-214ENST00000576544 1720 ntTSL 515.54■□□□□ 0.081e-29■□□□□ 10.8
YBX3P16989 ACTG1-215ENST00000576917 1958 ntTSL 514.51□□□□□ -0.091e-29■□□□□ 10.8
YBX3P16989 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.121e-29■□□□□ 10.8
YBX3P16989 PARK7-207ENST00000469225 711 ntTSL 312.45□□□□□ -0.423e-10■□□□□ 10.8
YBX3P16989 TMEM259-210ENST00000592618 1877 ntTSL 527.86■■■□□ 2.051e-10■□□□□ 10.8
YBX3P16989 TMEM259-211ENST00000593068 1965 ntTSL 520.59■□□□□ 0.891e-10■□□□□ 10.8
YBX3P16989 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.7■□□□□ 0.741e-10■□□□□ 10.8
Retrieved 100 of 29,075 protein–RNA pairs in 179.2 ms