Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.82■□□□□ 0.6
CDKL5O76039 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.82■□□□□ 0.6
CDKL5O76039 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDKL5O76039 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDKL5O76039 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
CDKL5O76039 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDKL5O76039 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDKL5O76039 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.81■□□□□ 0.6
CDKL5O76039 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.81■□□□□ 0.6
CDKL5O76039 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.81■□□□□ 0.6
CDKL5O76039 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.81■□□□□ 0.6
CDKL5O76039 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.81■□□□□ 0.6
CDKL5O76039 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 AL513210.1-201ENST00000629608 234 ntBASIC18.81■□□□□ 0.6
CDKL5O76039 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.81■□□□□ 0.6
CDKL5O76039 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDKL5O76039 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.81■□□□□ 0.6
CDKL5O76039 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDKL5O76039 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDKL5O76039 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 AP005117.1-202ENST00000581724 1908 ntBASIC18.8■□□□□ 0.6
CDKL5O76039 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.8■□□□□ 0.6
CDKL5O76039 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.8■□□□□ 0.6
CDKL5O76039 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.8■□□□□ 0.6
CDKL5O76039 SLC25A39P2-201ENST00000537614 270 ntBASIC18.8■□□□□ 0.6
CDKL5O76039 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.8■□□□□ 0.6
CDKL5O76039 AC243562.2-201ENST00000561247 970 ntBASIC18.8■□□□□ 0.6
CDKL5O76039 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 AC010327.4-202ENST00000591484 748 ntBASIC18.8■□□□□ 0.6
CDKL5O76039 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.8■□□□□ 0.6
CDKL5O76039 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.8■□□□□ 0.6
CDKL5O76039 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDKL5O76039 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDKL5O76039 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.79■□□□□ 0.6
CDKL5O76039 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDKL5O76039 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.79■□□□□ 0.6
CDKL5O76039 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.79■□□□□ 0.6
CDKL5O76039 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDKL5O76039 RPSAP43-201ENST00000402237 625 ntBASIC18.79■□□□□ 0.6
CDKL5O76039 UPF3AP3-201ENST00000420996 769 ntBASIC18.79■□□□□ 0.6
CDKL5O76039 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
CDKL5O76039 AC005237.2-201ENST00000434368 219 ntBASIC18.79■□□□□ 0.6
CDKL5O76039 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.79■□□□□ 0.6
CDKL5O76039 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms