Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS9D1Q9Y2B5 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS9D1Q9Y2B5 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS9D1Q9Y2B5 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS9D1Q9Y2B5 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 TFAMP1-201ENST00000412727 736 ntBASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 AC023274.1-201ENST00000418278 595 ntBASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 AL135744.1-201ENST00000565098 629 ntBASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 MTDHP5-201ENST00000598980 586 ntBASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS9D1Q9Y2B5 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 MIR574-201ENST00000385209 96 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 MIR940-201ENST00000401276 94 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 AP000347.1-202ENST00000435868 847 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 MKNK2P1-201ENST00000437526 628 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 AC022494.1-201ENST00000466044 728 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SPTSSB-204ENST00000617024 1292 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 C20orf181-201ENST00000623918 480 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms