Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VRK1Q99986 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VRK1Q99986 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.4□□□□□ -0.1
VRK1Q99986 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.4□□□□□ -0.1
VRK1Q99986 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VRK1Q99986 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VRK1Q99986 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.4□□□□□ -0.1
VRK1Q99986 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VRK1Q99986 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.39□□□□□ -0.11
VRK1Q99986 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VRK1Q99986 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
VRK1Q99986 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.39□□□□□ -0.11
VRK1Q99986 AP000344.2-201ENST00000512987 629 ntBASIC14.39□□□□□ -0.11
VRK1Q99986 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.39□□□□□ -0.11
VRK1Q99986 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.39□□□□□ -0.11
VRK1Q99986 AC027796.2-201ENST00000575326 344 ntBASIC14.39□□□□□ -0.11
VRK1Q99986 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.39□□□□□ -0.11
VRK1Q99986 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 REXO1L3P-201ENST00000622202 1288 ntBASIC14.39□□□□□ -0.11
VRK1Q99986 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
VRK1Q99986 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 AC012569.1-201ENST00000591191 1524 ntBASIC14.39□□□□□ -0.11
VRK1Q99986 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.39□□□□□ -0.11
VRK1Q99986 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VRK1Q99986 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VRK1Q99986 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VRK1Q99986 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VRK1Q99986 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VRK1Q99986 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VRK1Q99986 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.38□□□□□ -0.11
VRK1Q99986 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.38□□□□□ -0.11
VRK1Q99986 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 TIMM8BP1-201ENST00000452384 211 ntBASIC14.38□□□□□ -0.11
VRK1Q99986 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
VRK1Q99986 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.38□□□□□ -0.11
VRK1Q99986 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.38□□□□□ -0.11
VRK1Q99986 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.38□□□□□ -0.11
VRK1Q99986 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.38□□□□□ -0.11
VRK1Q99986 AC004835.2-201ENST00000603762 682 ntBASIC14.38□□□□□ -0.11
VRK1Q99986 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms