Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 RTN3P1-201ENST00000536295 711 ntBASIC16.07■□□□□ 0.16
TTC28Q96AY4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 AC015910.1-201ENST00000579400 975 ntBASIC16.07■□□□□ 0.16
TTC28Q96AY4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 AL161773.1-201ENST00000624845 863 ntBASIC16.06■□□□□ 0.16
TTC28Q96AY4 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 RN7SL48P-201ENST00000579283 293 ntBASIC16.06■□□□□ 0.16
TTC28Q96AY4 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.06■□□□□ 0.16
TTC28Q96AY4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TTC28Q96AY4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 AC103988.2-201ENST00000561804 725 ntBASIC16.05■□□□□ 0.16
TTC28Q96AY4 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 AL354989.2-201ENST00000435838 1540 ntBASIC16.05■□□□□ 0.16
TTC28Q96AY4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TTC28Q96AY4 SLC25A1P3-201ENST00000395415 828 ntBASIC16.05■□□□□ 0.16
TTC28Q96AY4 AL353622.2-201ENST00000605846 425 ntBASIC16.05■□□□□ 0.16
TTC28Q96AY4 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.05■□□□□ 0.16
TTC28Q96AY4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AL121723.1-201ENST00000445194 1519 ntBASIC16.04■□□□□ 0.16
TTC28Q96AY4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 TPM3P8-201ENST00000330554 643 ntBASIC16.04■□□□□ 0.16
TTC28Q96AY4 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AP002803.1-201ENST00000528836 498 ntBASIC16.04■□□□□ 0.16
TTC28Q96AY4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC068587.8-201ENST00000641239 219 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms