Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
CCDC88AQ3V6T2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC104457.1-201ENST00000401024 814 ntBASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 KRT18P64-201ENST00000434946 1219 ntBASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC022137.2-201ENST00000503482 481 ntBASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC134312.5-201ENST00000568031 1313 ntBASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 AL022328.3-201ENST00000607943 679 ntBASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CCDC88AQ3V6T2 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 UPF3AP2-201ENST00000457924 1132 ntBASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms