Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
USE1Q9NZ43 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USE1Q9NZ43 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USE1Q9NZ43 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.82■■□□□ 1.08
USE1Q9NZ43 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USE1Q9NZ43 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.82■■□□□ 1.08
USE1Q9NZ43 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USE1Q9NZ43 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USE1Q9NZ43 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.81■■□□□ 1.08
USE1Q9NZ43 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USE1Q9NZ43 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USE1Q9NZ43 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.81■■□□□ 1.08
USE1Q9NZ43 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.81■■□□□ 1.08
USE1Q9NZ43 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
USE1Q9NZ43 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USE1Q9NZ43 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.81■■□□□ 1.08
USE1Q9NZ43 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
USE1Q9NZ43 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USE1Q9NZ43 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.8■■□□□ 1.08
USE1Q9NZ43 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
USE1Q9NZ43 AL162393.1-201ENST00000437852 946 ntBASIC21.8■■□□□ 1.08
USE1Q9NZ43 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.8■■□□□ 1.08
USE1Q9NZ43 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USE1Q9NZ43 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
USE1Q9NZ43 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
USE1Q9NZ43 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.79■■□□□ 1.08
USE1Q9NZ43 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
USE1Q9NZ43 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.79■■□□□ 1.08
USE1Q9NZ43 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
USE1Q9NZ43 AC087741.3-201ENST00000624270 1347 ntBASIC21.79■■□□□ 1.08
USE1Q9NZ43 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.78■■□□□ 1.08
USE1Q9NZ43 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.78■■□□□ 1.08
USE1Q9NZ43 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USE1Q9NZ43 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USE1Q9NZ43 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.77■■□□□ 1.08
USE1Q9NZ43 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USE1Q9NZ43 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USE1Q9NZ43 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USE1Q9NZ43 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.76■■□□□ 1.07
USE1Q9NZ43 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.76■■□□□ 1.07
USE1Q9NZ43 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USE1Q9NZ43 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.76■■□□□ 1.07
USE1Q9NZ43 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USE1Q9NZ43 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USE1Q9NZ43 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USE1Q9NZ43 MIR219A2-201ENST00000608502 1504 ntBASIC21.75■■□□□ 1.07
USE1Q9NZ43 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USE1Q9NZ43 AC021231.2-201ENST00000594613 730 ntBASIC21.75■■□□□ 1.07
USE1Q9NZ43 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USE1Q9NZ43 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
USE1Q9NZ43 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USE1Q9NZ43 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
USE1Q9NZ43 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 AL359258.2-201ENST00000564063 1566 ntBASIC21.74■■□□□ 1.07
USE1Q9NZ43 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.74■■□□□ 1.07
USE1Q9NZ43 AC148477.6-201ENST00000623746 465 ntBASIC21.74■■□□□ 1.07
USE1Q9NZ43 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
USE1Q9NZ43 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USE1Q9NZ43 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 CLDN5-201ENST00000403084 2357 ntBASIC21.73■■□□□ 1.07
USE1Q9NZ43 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USE1Q9NZ43 MIR6089-201ENST00000616698 64 ntBASIC21.73■■□□□ 1.07
USE1Q9NZ43 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
USE1Q9NZ43 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USE1Q9NZ43 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.72■■□□□ 1.07
USE1Q9NZ43 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.72■■□□□ 1.07
USE1Q9NZ43 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 ABCB10P4-201ENST00000566803 2184 ntBASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms